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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGACTGAGAAATTTAGGGACCATATGTTAAACAAACTATCAAAAAGAGATCTTTTTGAAGACTCTGTTGATGAAATTGTTGGAGTCTGCACTGAGgtaatctcaaatcttctcaccttcactcatgtatatctgttcgtgtctatgtgagatgtcttgaattgtggtgtttttagtaattgtgttccatttcaaa...

Basic information

species Arabidopsis thaliana
transcript AT1G10522.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86086238|gb|DR381997.1|DR381997
EST:     GAGATCTTTTTGAAGACTCTGTTGATGAAATTGTTGGAGTCTGCACTGAG                         ATCTTCGAGACGTTCTTGCGCAGTGAGTATGGAGGACCTGGTACACTCTTG
genomic: GAGATCTTTTTGAAGACTCTGTTGATGAAATTGTTGGAGTCTGCACTGAGgtaatctcaa ... ttattgacagATCTTCGAGACGTTCTTGCGCAGTGAGTATGGAGGACCTGGTACACTCTTG
EST: gi|125051304|gb|EL123573.1|EL123573
EST:     GAGATCTTTTTGAAGACTCTGTTGATGAAATTGTTGGAGTCTGCACTGAG                         ATCTTCGAGACGTTCTTGCGCA
genomic: GAGATCTTTTTGAAGACTCTGTTGATGAAATTGTTGGAGTCTGCACTGAGgtaatctcaa ... ttattgacagATCTTCGAGACGTTCTTGCGCA
EST: gi|164056810|gb|EL994519.1|EL994519
EST:     GTCTGCACTGAG                         ATCTTCGAGACGTTCTTGCGCAGTGAGTATGGAGGACCTGGTACACTCTTG
genomic: GTCTGCACTGAGgtaatctcaa ... ttattgacagATCTTCGAGACGTTCTTGCGCAGTGAGTATGGAGGACCTGGTACACTCTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGACTGAGAAATTTAGGGACCATATGTTAAACAAACTATCAAAAAGAGATCTTTTTGAAGACTCTGTTGATGAAATTGTTGGAGTCTGCACTGAGgtaatctcaaatcttctcaccttcactcatgtatatctgttcgtgtctatgtgagatgtcttgaattgtggtgtttttagtaattgtgttccatttcaaa

- - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttctcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcactc