1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagctcatttcctcttcttcttcaactcatttttgatggatgatcgaaacctaattgatgtgtgatataaccagGAGACTGAGAAATTTAGGGACCATATGTTAAACAAACTATCAAAAAGAGATCTTTTTGAAGACTCTGTTGATGAAATTGTTGGAGTCTGCACTGAG
species | Arabidopsis thaliana |
transcript | AT1G10522.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGCTGCTGAGTACAAGTTTCCGGATCCCATACCTGAATTCGCCGAAGCT GAGACTGAGAAATTTAGGGACCATATGTTAAACAAACTATCAAAAAGAGATEST: gi|125102685|gb|EL157359.1|EL157359
genomic: GAGCTGCTGAGTACAAGTTTCCGGATCCCATACCTGAATTCGCCGAAGCTgtgagctcat ... atataaccagGAGACTGAGAAATTTAGGGACCATATGTTAAACAAACTATCAAAAAGAGAT
EST: AGTACAAGTTTCCGGATCCCATACCTGAATTCGCCGAAGCT GAGACTGAGAAATTTAGGGACCATATGTTAAACAAACTATACAAAAAGAGA
genomic: AGTACAAGTTTCCGGATCCCATACCTGAATTCGCCGAAGCTgtgagctcat ... atataaccagGAGACTGAGAAATTTAGGGACCATATGTTAAACAAACTAT-CAAAAAGAGA
cttcaactcatttttgatggatgatcgaaacctaattgatgtgtgatataaccagGAGACTGAGAAATTTAGGGACCATATGTTAAACAAACTATCAAAAAGAGATCTTTTTGAAGACTCTGTTGATGAAATTGTTGGAGTCTGCACTGAG
atttttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctcatttcctcttcttcttcaactcatttttgatggatgatcgaaacctaattgatgtgtgatataaccagGAGACTGAGAAATTTAGGGACCATATGTTAAACAAACTATCAAAAAGAGATCTTTTTGAAGACTCTGTTGATGAAATTGTTGGAGTCTGCACTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG