1 5' 3' | 2 5' 3' | 3 5' 3' |
...gatactttaaaccccattctctaagtctgttatatgtcttggcatgagactcagggagttttaacagttttttgttctgcaccattgtgattattgacagATCTTCGAGACGTTCTTGCGCAGTGAGTATGGAGGACCTGGTACACTCTTGGTGATACCTTTCATTGACATGGCAGATACTCTCAACGAAAGGGAATTGC
species | Arabidopsis thaliana |
transcript | AT1G10522.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGATCTTTTTGAAGACTCTGTTGATGAAATTGTTGGAGTCTGCACTGAG ATCTTCGAGACGTTCTTGCGCAGTGAGTATGGAGGACCTGGTACACTCTTGEST: gi|125051304|gb|EL123573.1|EL123573
genomic: GAGATCTTTTTGAAGACTCTGTTGATGAAATTGTTGGAGTCTGCACTGAGgtaatctcaa ... ttattgacagATCTTCGAGACGTTCTTGCGCAGTGAGTATGGAGGACCTGGTACACTCTTG
EST: GAGATCTTTTTGAAGACTCTGTTGATGAAATTGTTGGAGTCTGCACTGAG ATCTTCGAGACGTTCTTGCGCAEST: gi|164056810|gb|EL994519.1|EL994519
genomic: GAGATCTTTTTGAAGACTCTGTTGATGAAATTGTTGGAGTCTGCACTGAGgtaatctcaa ... ttattgacagATCTTCGAGACGTTCTTGCGCA
EST: GTCTGCACTGAG ATCTTCGAGACGTTCTTGCGCAGTGAGTATGGAGGACCTGGTACACTCTTG
genomic: GTCTGCACTGAGgtaatctcaa ... ttattgacagATCTTCGAGACGTTCTTGCGCAGTGAGTATGGAGGACCTGGTACACTCTTG
gagactcagggagttttaacagttttttgttctgcaccattgtgattattgacagATCTTCGAGACGTTCTTGCGCAGTGAGTATGGAGGACCTGGTACACTCTTGGTGATACCTTTCATTGACATGGCAGATACTCTCAACGAAAGGGAATTGC
ttttaac putative branch site (score: 2)
ttttaacagtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatactttaaaccccattctctaagtctgttatatgtcttggcatgagactcagggagttttaacagttttttgttctgcaccattgtgattattgacagATCTTCGAGACGTTCTTGCGCAGTGAGTATGGAGGACCTGGTACACTCTTGGTGATACCTTTCATTGACATGGCAGATACTCTCAACGAAAGGGAATTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - ttaaacc
- - - - - - - - - - ctaagtc