Sequence
atgc intronic sequence ATGC exonic sequencegttatagttctctccttctttcacatctgctatctaccaactcattagagtcctgatattcttatgttgattgactaaccatacccatgtttgtgtttcagACTGTAGAGGAAGTCAGTTTTTCTGCAAATGGAATTACAGCTGCAGGAGTTAAAGCCTTTGATGGTGTTCTTCAATCAAATATTATGTTAAAAATTCTTA
Basic information
species | Arabidopsis thaliana |
transcript | AT1G10510.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G10510.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv01s0026g00610.t01 (Vitis vinifera), 3'ss of exon 3
gttatagttctctccttctttcacatctgctatcta--ccaactcattagagtcctgatattcttatgttga-----ttgactaaccatacccatgtttgtgtttcagACTGTAGAGGAAGTCAGTTTTTCTGCAAATGGAATTACAGCTGCAGGAGTTAAAGCCTTTGATGGTGTTCTTCAATCAAATATTATGTTAAAAATTCTTA
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--------tttctttatgatgaaccttttttttttaatctacattgggagagtttggatgcagtcacagagaacaagtttactgaatgtgtcttcccatgtgtctcagAATGCGGAGGAAGTGAGTTTTGCTGCTAATGGAATAACTGCAGCTGGATTGAAAGCCTTTGATGGTGTTCTTCAATCAAACATTGTGTTAAAGACCCTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124763648|gb|EH853778.1|EH853778EST: TTGGAGATGAAGGATTATTCTTTCTTGCTGAAAGCCTTGGGTATAATCAG ACTGTAGAGGAAGTCAGTTTTTCTGCAAATGGAATTACAGCTGCAGGAGTT
genomic: TTGGAGATGAAGGATTATTCTTTCTTGCTGAAAGCCTTGGGTATAATCAGgttatagttc ... tgtgtttcagACTGTAGAGGAAGTCAGTTTTTCTGCAAATGGAATTACAGCTGCAGGAGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agagtcctgatattcttatgttgattgactaaccatacccatgtttgtgtttcagACTGTAGAGGAAGTCAGTTTTTCTGCAAATGGAATTACAGCTGCAGGAGTTAAAGCCTTTGATGGTGTTCTTCAATCAAATATTATGTTAAAAATTCTTA
gactaac putative branch site (score: 1)
atattcttat TA-rich tract