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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGGAGCATTCGCCATTGCTCAAGCATTGAAGGCCAATGAAGATGTCACAGTTACATCGATAAACCTTGGGAACAACTTCATCACCAAGTTTGGACAGgtaagaaacatatggtgcaatggagataatcaaatctttcgctcgacattgctgagaaatttcccttttgtgttatccag

Basic information

species Arabidopsis thaliana
transcript AT1G10510.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G10510.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: Vv01s0026g00610.t01 (Vitis vinifera), 5'ss of exon 16
TGATGGAGCATTCGCCATTGCTCAAGCATTGAAGGCCAATGAAGATGTCACAGTTACATCGATAAACCTTGGGAACAACTTCATCACCAAGTTTGGACAGgtaagaaacatatggtgcaatggagataatcaaatctttcgctcg-acattgctgagaaatttcccttttgtgttatccag
||| || ||||| ||||||||||||||| | ||||| |||||||||||  |||| || ||  ||||||||| || ||||||| |||| || |||||||| ||||    | | |    |  |   | |  ||   | | | |     | |    |    ||    | ||   |   || |||
TGAAGGGGCATTTGCCATTGCTCAAGCACTCAAGGCTAATGAAGATGTGGCAGTCACGTCTCTAAACCTTGCGAGCAACTTCCTCACAAAATTTGGACAAgtaaattcctttt----ctgttttgtttttcctgtttgtagtgtatatagctatatataacaaactttaacttccatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116453657|gb|EG496249.1|EG496249
EST:     CAGTTACATCGATAAACCTTGGGAACAACTTCATCACCAAGTTTGGACAG                         AGTGCGCTCACGGATGCTAGAGATCATGTTCTTGAGATGACTGAAAAGGAA
genomic: CAGTTACATCGATAAACCTTGGGAACAACTTCATCACCAAGTTTGGACAGgtaagaaaca ... tgttatccagAGTGCGCTCACGGATGCTAGAGATCATGTTCTTGAGATGACTGAAAAGGAA
EST: gi|86087415|gb|DR383174.1|DR383174
EST:     CAGTTACATCGATAAACCTTGGGAACAACTTCATCACCAAGTTTGGACAG                         AGTGCGCTCACGGATGCTAGAGATCATGTTCTTGAGATGACTGAAAAGGAA
genomic: CAGTTACATCGATAAACCTTGGGAACAACTTCATCACCAAGTTTGGACAGgtaagaaaca ... tgttatccagAGTGCGCTCACGGATGCTAGAGATCATGTTCTTGAGATGACTGAAAAGGAA
EST: gi|164000405|gb|ES131034.1|ES131034
EST:     AGTTACATCGATAAACCTTGGGTAACAACTTCATCACCAAGTTTGGACAG                         AGTGCGCTCACGGATGCTAGAGATCATGTTC
genomic: AGTTACATCGATAAACCTTGGG-AACAACTTCATCACCAAGTTTGGACAGgtaagaaaca ... tgttatccagAGTGCGCTCACGGATGCTAGAGATCATGTTC