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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaaaaaagcgctacttcgtttatcaatactgtgtcttcttttaagacttgtaagcaggtcaatcttattattttgcctcatttgtagGATGATGGAGCATTCGCCATTGCTCAAGCATTGAAGGCCAATGAAGATGTCACAGTTACATCGATAAACCTTGGGAACAACTTCATCACCAAGTTTGGAC

Basic information

species Arabidopsis thaliana
transcript AT1G10510.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G10510.1 (Arabidopsis thaliana), 3'ss of exon 16
lower sequence: Vv01s0026g00610.t01 (Vitis vinifera), 3'ss of exon 15
gtaaaaaaaaagcgctacttcgtttatcaatactgtgtcttcttttaagacttgtaagcaggtcaatcttattattttgcctcatttgtagGATGATGGAGCATTCGCCATTGCTCAAGCATTGAAGGCCAATGAAGATGTCACAGTTACATCGATAAACCTTGGGAACAACTTCATCACCAAGTTTGGAC
       |   ||  |  ||   ||   ||| || | ||       |  |       ||||    |||| | | |      |  |    ||||||| || ||||| ||||||||||||||| | ||||| |||||||||||  |||| || ||  ||||||||| || ||||||| |||| || |||||||
-----gtatgggctttggttttcttga-aattctttttcacaagacagtagcgcattgcagcagcatctcactgt--aattttgtgaacagGATGAAGGGGCATTTGCCATTGCTCAAGCACTCAAGGCTAATGAAGATGTGGCAGTCACGTCTCTAAACCTTGCGAGCAACTTCCTCACAAAATTTGGAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116453657|gb|EG496249.1|EG496249
EST:     TAGTTAATGAAGCTCTGACATCTGTGGATCTAGGATTCAATGAAATACGG                         GATGATGGAGCATTCGCCATTGCTCAAGCATTGAAGGCCAATGAAGATGTC
genomic: TAGTTAATGAAGCTCTGACATCTGTGGATCTAGGATTCAATGAAATACGGgtaaaaaaaa ... tcatttgtagGATGATGGAGCATTCGCCATTGCTCAAGCATTGAAGGCCAATGAAGATGTC
EST: gi|86087415|gb|DR383174.1|DR383174
EST:     AATGAAGCTCTGACATCTGTGGATCTAGGATTCAATGAAATACGG                         GATGATGGAGCATTCGCCATTGCTCAAGCATTGAAGGCCAATGAAGATGTC
genomic: AATGAAGCTCTGACATCTGTGGATCTAGGATTCAATGAAATACGGgtaaaaaaaa ... tcatttgtagGATGATGGAGCATTCGCCATTGCTCAAGCATTGAAGGCCAATGAAGATGTC
EST: gi|124756635|gb|EH846765.1|EH846765
EST:     TAGTTAATGAAGCTCTGACATCTGTGGATCTAGGATTCAACGAAATACGG                         GATGATGGAGCAT
genomic: TAGTTAATGAAGCTCTGACATCTGTGGATCTAGGATTCAATGAAATACGGgtaaaaaaaa ... tcatttgtagGATGATGGAGCAT
EST: gi|125073033|gb|EL137514.1|EL137514
EST:     ATTCAATG-AATACGG                         GATGATGGAGCATTCGCCATTGCTCAAGCATTGAAGGCCAATGAA
genomic: ATTCAATGAAATACGGgtaaaaaaaa ... tcatttgtagGATGATGGAGCATTCGCCATTGCTCAAGCATTGAAGGCCAATGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcttcttttaagacttgtaagcaggtcaatcttattattttgcctcatttgtagGATGATGGAGCATTCGCCATTGCTCAAGCATTGAAGGCCAATGAAGATGTCACAGTTACATCGATAAACCTTGGGAACAACTTCATCACCAAGTTTGGAC
                                      ttttgcctc  CT-rich tract
                          tcaatcttattatttt  TA-rich tract