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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCCAAAGGAACCGGGATGAAATCCATTGAACTAGCATTGTCCATGTGCGATATTGTTGACATATATGGTTTCACTGTTGATCCTGGATACACAGAGTGgcaagtatcttaaataacttttatccatattgctatctctcatatttccaaagctctttgggaggttggatacttacgattctgatcatatttttcctttgtatctttattatcaatgtag

Basic information

species Arabidopsis thaliana
transcript AT1G08660.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G08660.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G119791_T03 (Zea mays), 5'ss of exon 7
GTGCCAAAGGAACCGGGATGAAATCCATTGAACTAGCATTGTCCATGTGCGATATTGTTGACATATATGGTTTCACTGTTGATCCTGGATACACAGAGTGgcaagtatcttaaataacttttatccatattgctatctctcatatttccaaagctctttgggaggttggatacttacgattctgatcatatttttcctttgtatctttattatcaatgtag
|||| ||||| || || ||||| ||||| ||||| ||  | |||||||| |||||||||||||| |||||||| || ||||||||||| ||||| || |||  ||| |    |||  ||   || |   |   ||| ||  | |||  ||  ||   | || |   ||  | |  | | |  |    |||  | |    | |         || | |  ||
GTGCTAAAGGGACTGGCATGAAGTCCATAGAACTTGCCCTTTCCATGTGTGATATTGTTGACATGTATGGTTTTACAGTTGATCCTGGGTACACGGAATGgtgagt-taacgaatggctacaatac---taagtatttca-acattaacatggcagct-ggcactatgttttccaatgttcttttgtataaatatatactctgctcactacattatttcag

upper sequence: AT1G08660.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA16G05340.1 (Glycine max), 5'ss of exon 9
GTGCCAAAGGAACCGGGATGAAATCCATTGAACTAGCATTGTCCATGTGCGATATTGTTGACATATATGGTTTCACTGTTGATCCTGGATACACAGAGTGgcaagtatcttaaataacttttatccatattg-ctatctctcatatttccaaagct-ctttgggaggttggatacttacgattctgatcatattt-ttcctttgtatctttattatcaatgtag------------------------------------------------------------
||||||||||||| || |||||||| |||||  ||||| | |||||||| |||||| |||| |||||||| |||||||||||||| |||||||| || |||   || |||  |     |||||   ||||||  ||| | | |||||      | | | ||    | |     | |    ||| | |   ||||| ||  ||| | | |||||| |  || |                                                              
GTGCCAAAGGAACTGGAATGAAATCTATTGAGTTAGCACTCTCCATGTGTGATATTATTGATATATATGGCTTCACTGTTGATCCAGGATACACTGAATGgtgggtttctcta-----tttta---atattgattatttattatattcttggtgtttccttcattgatactccaatcttcatttttaaattatttgtttatttatttatttattttgtatatgaggttgtgatactaatgccttcaaacttttgatcttcctttttatcgtttttttcttatag

upper sequence: AT1G08660.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA19G27540.1 (Glycine max), 5'ss of exon 2
GTGCCAAAGGAACCGGGATGAAATCCATTGAACTAGCATTGTCCATGTGCGATATTGTTGACATATATGGTTTCACTGTTGATCCTGGATACACAGAGTGgcaagtatctta--------aataacttttatccatattgcta-----tctctcat----------------atttccaaagctctt------------------tgggaggttg-gatacttacgattctgatcatatt--tttcctttgtatctttattatcaatgtag
||||||||||||| || |||||||| |||||  ||||| | |||||||| |||||| |||| |||||||| |||||||||||||| |||||||| || |||   || |||          | | | | ||    |||||  |      ||  ||||                ||||  |||     |                  |||||||||| ||||||  ||  |   | ||| ||   ||||||| |||| || || ||  |  ||
GTGCCAAAGGAACAGGAATGAAATCTATTGAGTTAGCACTCTCCATGTGTGATATTATTGATATATATGGCTTCACTGTTGATCCAGGATACACTGAATGgtgggtttctctgttttgatattgattatttattatattcttggttcttccttcattatactccaaatcttcatttttaaattatctgtttatttattttgtacatgggaggttgtgatactaccgccttcaaacattttatcttcctttttatcatttttttct-tacag

upper sequence: AT1G08660.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv14s0068g01150.t01 (Vitis vinifera), 5'ss of exon 9
GTGCCAAAGGAACCGGGATGAAATCCATTGAACTAGCATTGTCCATGTGCGATATTGTTGACATATATGGTTTCACTGTTGATCCTGGATACACAGAGTGgcaagtatcttaaataacttttatccatattgctatctctcatatttccaaagctctttgggaggttggatacttac--gattctgatcatatttttcctttgtatctttattatcaatgtag
||||||||||||| || |||||||| || ||||||||| | |||||||| || ||||||||||||||||||||||| ||||||||||| |||||||| |||  ||| ||   |||||| || || | | || |||  |        |    || |  |   |   |||||| ||  |  |   || | |||  |||  | | |                    
GTGCCAAAGGAACTGGAATGAAATCTATAGAACTAGCACTTTCCATGTGTGACATTGTTGACATATATGGTTTCACCGTTGATCCTGGGTACACAGAATGgtcagt-tcaataataacatt-attcctcttcctaaatggacaccctgtttagtttgt--agtatttggatcctctcttgtcacttaacatggtttatcatagg-------------------