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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtactcacattagaaagagaaactgtctggctgcatcttgtgattcattttcttcaagcgctcattgcaaattgcagctttggccttgtgatgtaaccttctgtaactatcatttactgcagACAATGAAGTGCTTATAATAAAAAGTGTGACCCACCGAGACTTCAATGAAATGATAAAG

Basic information

species Arabidopsis thaliana
transcript AT1G08660.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164225882|gb|ES070150.1|ES070150
EST:     TGATTAAGATTCTCTAATGGGTCTG                         ACAATGAAGTGCTTATAATAAAAAGTGTGACCCACCGAGACTTCAATGAAA
genomic: TGATTAAGATTCTC-AATGGGTCTGgttagtactc ... tttactgcagACAATGAAGTGCTTATAATAAAAAGTGTGACCCACCGAGACTTCAATGAAA
EST: gi|164100773|gb|ES051386.1|ES051386
EST:     TGATTAAGATTCTCAATGGGTCTG                         ACAATGAAGTGCTTATAATAAAAAGTGTGACCCACCGAGACTTCAATGAAA
genomic: TGATTAAGATTCTCAATGGGTCTGgttagtactc ... tttactgcagACAATGAAGTGCTTATAATAAAAAGTGTGACCCACCGAGACTTCAATGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaattgcagctttggccttgtgatgtaaccttctgtaactatcatttactgcagACAATGAAGTGCTTATAATAAAAAGTGTGACCCACCGAGACTTCAATGAAATGATAAAG
                                 ctgtaac  putative branch site (score: 3)
                                        tatcattta  TA-rich tract