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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtatcttaaataacttttatccatattgctatctctcatatttccaaagctctttgggaggttggatacttacgattctgatcatatttttcctttgtatctttattatcaatgtagGACGCGTTACTTTTCCACGCCAAGGAAAGGGCACAACCCACTTCAAGGAAGGGCATACTACCAACTTCTAGAGTGTCTTGGTGTACAGATAACTTGTTAA

Basic information

species Arabidopsis thaliana
transcript AT1G08660.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G08660.2 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA16G05340.1 (Glycine max), 3'ss of exon 9
----------------------------------------------------gcaagtatcttaaataacttttatccatattgctatctctcatattt-ccaaagctctttgggaggttg-gatacttacgattctgatcatat--ttttcctttgtatctttattatcaatgtagGACGCGTTACTTTTCCACGCCAAGGAAAGGGCACAACCCACTTCAAGGAAGGGCATACTACCAACTTCTAGAGTGTCTTGGTGTACAGATAACTTGTTAA
                                                     ||   ||  |  |    |  | |  | |||  |   |    |||||    |   | | |  ||||||| |||||| | |  |   | | | |  | ||||||| |||| || || ||  | ||||||  | ||||| ||   ||| ||||| || |||||||||||||||||||| |||||||||||||| ||||| ||||||||                   
gtgggtttctctattttaatattgattatttattatattcttggtgtttccttcattgatactccaatcttcatttttaaattatttgtttatttatttatttattttgtatatgaggttgtgatactaatgccttcaaacttttgatcttcctttttatcgtttttttct-tatagGACAAGATACTTCTCTCAGCCTAGGAAGGGACACAACCCACTTCAAGGAAGAGCATACTACCAACTCCTAGAATGTCTTGGG------------------

upper sequence: AT1G08660.2 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA19G27540.1 (Glycine max), 3'ss of exon 2
--------------------------------------gcaagtatcttaaataacttttatccatattgctatctctca--tatttccaaagctcttt-------gggaggttg-gatacttacgattctgatcatat--ttttcctttgtatctttattatcaatgtagGACGCGTTACTTTTCCACGCCAAGGAAAGGGCACAACCCACTTCAAGGAAGGGCATACTACCAACTTCTAGAGTGTCTTGGTGTACAGATAACTTGTTAA
                                       |  |  ||||   | | | |  |||| ||    || | | |  ||| |    |  | |||       ||||||||| ||||||  ||  |   | ||| |  | ||||||| |||| || || ||  |  |||||  | ||||| ||   ||| ||||| || ||||| |||||||||||||| |||||||||||||| ||||| || |||||                   
gtgggtttctctgttttgatattgattatttattatattcttggttcttccttcattatactccaaatcttcatttttaaattatctgtttatttattttgtacatgggaggttgtgatactaccgccttcaaacattttatcttcctttttatcatttttttct-tacagGACAAGATACTTCTCTCAGCCTAGGAAGGGACACAATCCACTTCAAGGAAGAGCATACTACCAACTCCTAGAATGCCTTGGG------------------

upper sequence: AT1G08660.2 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: Vv14s0068g01150.t01 (Vitis vinifera), 3'ss of exon 9
gcaagtatcttaaataacttttatccatattgctatctctcatatttccaaagctctttgggaggttggatacttacgattctgatcatatttttcctttgtatctttattatcaatgtagGACGCGTTACTTTTCCACGCCAAGGAAAGGGCACAACCCACTTCAAGGAAGGGCATACTACCAACTTCTAGAGTGTCTTGGTGTACAGATAACTTGTTAA
                    ||||  || ||     || ||   ||  ||    | ||     | | ||||| |    ||  |  |     ||||   | || |  | ||  |     |||||| || ||||| || || ||||||||||| ||||| |||||||||||||||||||| ||||| || |||||||| |||||                   
-----------------tccttattgat-ttagaggctttc---ttctcatgcttgttaaactgatgggatattgtttatcttcctttcccttttgactagttttatgatatttctcatagGACCCGATACTTCTCTACACCAAGGAAAGGACACAATCCACTTCAAGGAAGGGCATATTACCAGCTCCTAGAGTGCCTTGGG------------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggatacttacgattctgatcatatttttcctttgtatctttattatcaatgtagGACGCGTTACTTTTCCACGCCAAGGAAAGGGCACAACCCACTTCAAGGAAGGGCATACTACCAACTTCTAGAGTGTCTTGGTGTACAGATAACTTGTTAA
                               tttgtatctttattat  TA-rich tract