Sequence
atgc intronic sequence ATGC exonic sequenceAGTTGCAAAAATATGTCTAATGGAATATGACGGTGACATTCCAAGGACTTTGGAAGAACTACTTTCACTTCCAGGAGTTGGTCCTAAGATTGCTCATCTGgtataagttgcccatattattccgctttgtaagagagatacatgttttcaaagttcttaaaaggtttctttgatgtactgcgatag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G05900.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G05900.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA13G41880.1 (Glycine max), 5'ss of exon 3
AGTTGCAAAAATATGTCTAATGGAATATGACGGTGACATTCCAAGGACTTTGGAAGAACTACTTTCACTTCCAGGAGTTGGTCCTAAGATTGCTCATCTGgtataagttgcccatattattccgctttgtaagagagatacat-gttttcaaagttcttaaaaggtttctttgatgtactgcgatag------------------------
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AATTGCCAATATTTGTCTCTTGAAGTATGATGGAGACATACCAAGCTCAATTGAGGAACTACTCTTGCTGCCAGGAGTAGGTCCTAAGATTGCTCATCTGgtacg-------tataaaatgc----ttatgagattcaaaaatcatttttttttctgttaaaataattatttggtatgacacattaggaattagttcctggatgaaaaaac
upper sequence: AT1G05900.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA15G03550.1 (Glycine max), 5'ss of exon 6
AGTTGCAAAAATATGTCTAATGGAATATGACGGTGACATTCCAAGGACTTTGGAAGAACTACTTTCACTTCCAGGAGTTGGTCCTAAGATTGCTCATCTGgtataagttgcccatattattccgctttgtaagagagatacatgttttcaaagttcttaaaaggtttctttgatgtactgc--gatag--------------
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AATTGCCAATATTTGTCTCATGAAATATGATGGAGACATTCCTAGCTCAATTGAGGAACTACTCTTGCTGCCAGGAGTTGGTCCTAAGATTGCTCATTTGgtgcgtacaaa--atgcttttgtgattcaaaaagtatttttccttttttttcttggttaaaataattatttggtatgacactcattaggaattagtcccaggMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86080365|gb|DR376122.1|DR376122EST: ACTACTTTCACTTCCAGGAGTTGGTCCTAAGATTGCTCATCTG GTTTTGCATGTAGCCTGGAATGATGTTCAAGGGATATGTGTAGACACACAT
genomic: ACTACTTTCACTTCCAGGAGTTGGTCCTAAGATTGCTCATCTGgtataagttg ... actgcgatagGTTTTGCATGTAGCCTGGAATGATGTTCAAGGGATATGTGTAGACACACAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTTGCAAAAATATGTCTAATGGAATATGACGGTGACATTCCAAGGACTTTGGAAGAACTACTTTCACTTCCAGGAGTTGGTCCTAAGATTGCTCATCTGgtataagttgcccatattattccgctttgtaagagagatacatgttttcaaagttcttaaaaggtttctttgatgtactgcgatag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC