1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttttctttcacgagactctactctactactcttagtggcattttgggtacatttattctttacggaaaacgcgatgtccctaagatgtttatttagGGCTAGGCATACCACCTGAAAACTGGGAAAAGGTGCTCGAGGGTATTCGAAAAATGAAACCTTCAGAAGAAGCACCAGTTAATGCTGTAGAATGTGATAG
species | Arabidopsis thaliana |
transcript | AT1G05900.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATAAAATCAACAGAAGCTAGCCCTTCTGCATCGTCGATCAAAACAGCAG GGCTAGGCATACCAEST: gi|86044416|gb|DR340171.1|DR340171
genomic: CATAAAATCAACAGAAGCTAGCCCTTCTGCATCGTCGATCAAAACAGCAGgttttctttc ... gtttatttagGGCTAGGCATACCA
EST: CATAAAATCAACAGAAGCTAGCCCTTCTGCATCGTCGATCAAAACAGCAG GGCTAGGCATACCACCTGAAAACTGGGAAA-GGTG
genomic: CATAAAATCAACAGAAGCTAGCCCTTCTGCATCGTCGATCAAAACAGCAGgttttctttc ... gtttatttagGGCTAGGCATACCACCTGAAAACTGGGAAAAGGTG
tttgggtacatttattctttacggaaaacgcgatgtccctaagatgtttatttagGGCTAGGCATACCACCTGAAAACTGGGAAAAGGTGCTCGAGGGTATTCGAAAAATGAAACCTTCAGAAGAAGCACCAGTTAATGCTGTAGAATGTGATAG
tttattt CT-rich tract
tacatttattcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttctttcacgagactctactctactactcttagtggcattttgggtacatttattctttacggaaaacgcgatgtccctaagatgtttatttagGGCTAGGCATACCACCTGAAAACTGGGAAAAGGTGCTCGAGGGTATTCGAAAAATGAAACCTTCAGAAGAAGCACCAGTTAATGCTGTAGAATGTGATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG