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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataagttgcccatattattccgctttgtaagagagatacatgttttcaaagttcttaaaaggtttctttgatgtactgcgatagGTTTTGCATGTAGCCTGGAATGATGTTCAAGGGATATGTGTAGACACACATGTGCATCGTATTTGCAATAGACTTGGTTGGGTGTCTAAACCTGGAACGA

Basic information

species Arabidopsis thaliana
transcript AT1G05900.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G05900.2 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA13G41880.1 (Glycine max), 3'ss of exon 3
-----------gtataagttgcccatattattccgctttgtaagagagata-catgttttcaaagttcttaaaaggtttctttgatgtactgcg--atagGTTTTGCATGTAGCCTGGAATGATGTTCAAGGGATATGTGTAGACACACATGTGCATCGTATTTGCAATAGACTTGGTTGGGTGTCTAAACCTGGAACGA
           ||| |   |    | || ||       || | ||   |||     ||||     | ||    |  ||| ||   |     ||   ||||||| ||  ||| |  |||||  |||| ||||||||||||||||| || ||||| || || ||||||||| | ||||| ||||| || | ||| ||  | |
gctttcatcaagtaaattcttttgacatcatcaaaacatgcatgattcatagtgcttttttgttttcctctttaaatttattctgttagtggcagtatagGTTATGATTGTTGGATGGAACAATGTCCAAGGGATATGTGTAGATACTCATGTCCACCGCATTTGCAATCGTCTTGGATGGGTTTCGAGACCAGGCTCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080365|gb|DR376122.1|DR376122
EST:     ACTACTTTCACTTCCAGGAGTTGGTCCTAAGATTGCTCATCTG                         GTTTTGCATGTAGCCTGGAATGATGTTCAAGGGATATGTGTAGACACACAT
genomic: ACTACTTTCACTTCCAGGAGTTGGTCCTAAGATTGCTCATCTGgtataagttg ... actgcgatagGTTTTGCATGTAGCCTGGAATGATGTTCAAGGGATATGTGTAGACACACAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agagagatacatgttttcaaagttcttaaaaggtttctttgatgtactgcgatagGTTTTGCATGTAGCCTGGAATGATGTTCAAGGGATATGTGTAGACACACATGTGCATCGTATTTGCAATAGACTTGGTTGGGTGTCTAAACCTGGAACGA
                                    ctttgat  putative branch site (score: 5)
                      ttcttaaaa  TA-rich tract