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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGAGCTAGGTGTAACCTTGGCTCAGCTTGCAATCGCATGGTGTGCTTCAAATCCTAATGTGTCATCTGTTATCACTGGTGCCACAAGGGAGTCACAGgttagttcttgatcgcttataaagcattaacatagcgagtctcggtctagatttggatccaagatctgaaagattttgtttctttttttgtaccttgacag

Basic information

species Arabidopsis thaliana
transcript AT1G04690.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G04690.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA10G24620.1 (Glycine max), 5'ss of exon 3
AGATGAGCTAGGTGTAACCTTGGCTCAGCTTGCAATCGCATGGTGTGCTTCAAATCCTAATGTGTCATCTGTTATCACTGGTGCCACAAGGGAGTCACAGgttagttcttgatcgcttataaagcattaac----atagcgagtctcggtctagatttggatccaagatctgaaagattttgtttctttttttgtaccttgacag
 || ||||| |||||  | ||| ||||||||||||| || ||||||||| | ||||||||||| || || ||||||  |||||| |||| |||||| |||||||||||||  |    |       ||| ||    |  | ||||     | ||  | | |||  ||  |       ||| || |       |      ||     
GGAAGAGCTTGGTGTGCCGTTGTCTCAGCTTGCAATTGCGTGGTGTGCTGCTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAGgttagttctttttgttgttgggtttatttaccgtaaaggagagtgattatttatctgttgatgaaatgttgattgcattgtggtgagaaactaacctgtt-----

upper sequence: AT1G04690.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA20G19000.1 (Glycine max), 5'ss of exon 3
AGATGAGCTAGGTGTAACCTTGGCTCAGCTTGCAATCGCATGGTGTGCTTCAAATCCTAATGTGTCATCTGTTATCACTGGTGCCACAAGGGAGTCACAGgttagtt--cttgatcgct-----tataaagcattaacatagcgagtctcggtctagatttggatccaagatctgaaagattttgtttctttttttgtaccttgacag
 |||||||| |||||  | ||| |||||||||| || || ||||||||| | ||||||||||| || || ||||||  |||||| |||| |||||| ||||||||||  |||     ||     |||  | | |||| |    ||||    |  ||  | | | |  ||  |||     ||| || |       |             
GGATGAGCTTGGTGTGCCATTGTCTCAGCTTGCGATTGCGTGGTGTGCTGCTAATCCTAATGTTTCCTCGGTTATCTGTGGTGCTACAAAGGAGTCTCAGgttagttgtcttcgctactggatttatttaccgttaagaagaagagtgattgcttatctgttgttgaaatgtctattgcattgtggtgagaaaataagct--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163991516|gb|ES074748.1|ES074748
EST:     AAATCCTAATGTGTCATCTGTTATCACTGGTGCCACAAGGGAGTCACAG                         ATTCAAGAAAATATGAAAG
genomic: AAATCCTAATGTGTCATCTGTTATCACTGGTGCCACAAGGGAGTCACAGgttagttctt ... accttgacagATTCAAGAAAATATGAAAG
EST: gi|86077892|gb|DR373649.1|DR373649
EST:     CAAATCCTAATGTGTCATCTGTTATCACTGGTGCCACAAGGGAGTCACAG                         ATTCAAGAAAATATGAAAGCTGTTGATGTGATCCCATTGTTGACCCCTATT
genomic: CAAATCCTAATGTGTCATCTGTTATCACTGGTGCCACAAGGGAGTCACAGgttagttctt ... accttgacagATTCAAGAAAATATGAAAGCTGTTGATGTGATCCCATTGTTGACCCCTATT
EST: gi|125254408|gb|EL268493.1|EL268493
EST:     CAAATCCTAATGTGTCATCTGTTATCACTGGTGCCACAAGGGAGTCACAG                         ATTCAAGAAAATATGAAAGCTGTTGA
genomic: CAAATCCTAATGTGTCATCTGTTATCACTGGTGCCACAAGGGAGTCACAGgttagttctt ... accttgacagATTCAAGAAAATATGAAAGCTGTTGA
EST: gi|47831309|gb|CK120993.1|CK120993
EST:     CAAATCCTAATGTGTCATCTGTTATCACTGGTGCCACAAGGGAGTCACAG                         ATTCAAGAAAATATGAAAGCTGTTGATG
genomic: CAAATCCTAATGTGTCATCTGTTATCACTGGTGCCACAAGGGAGTCACAGgttagttctt ... accttgacagATTCAAGAAAATATGAAAGCTGTTGATG
EST: gi|124986496|gb|EL059014.1|EL059014
EST:     CAAATCCTAATGTGTCATCTGTTATCACTGGTGCCACAAGGGAGTCACAG                         ATTCAAGAAAATATGAAAGCTGTTGATGTGAT
genomic: CAAATCCTAATGTGTCATCTGTTATCACTGGTGCCACAAGGGAGTCACAGgttagttctt ... accttgacagATTCAAGAAAATATGAAAGCTGTTGATGTGAT
EST: gi|116446909|gb|EG489501.1|EG489501
EST:     CAAATCCTAATGTGTCATCTGTTATCACTGGTGCCACAAGGGAGTCACAG                         ATTCAAGAAAATATGAAAGCTGTTGATGTGATCCCATTGTTGACCCCTATT
genomic: CAAATCCTAATGTGTCATCTGTTATCACTGGTGCCACAAGGGAGTCACAGgttagttctt ... accttgacagATTCAAGAAAATATGAAAGCTGTTGATGTGATCCCATTGTTGACCCCTATT