1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtattccttttttttcctttttcttgtgtattcttggtcatatttgctaagacctcaatctgcttctgcatctaactaatacactggtacatgtcttggttttaatttctttcgcagAACCTTGCCAATAGATCACTTGTGGATGACGTGCTGAGGAAAGTTAGCGGTCTCAAACCCATTGCAGATGAGCTAGGTGTAACCTTGGCTCAGCTTGCAA
species | Arabidopsis thaliana |
transcript | AT1G04690.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACAAGGGAGCTATTCCCTCAGACAGCCGATTTGCATTGGAGAACTACAAA AACCTTGCCAATAGATCACTTGTGGATGACGTGCTGAGGEST: gi|86077892|gb|DR373649.1|DR373649
genomic: ACAAGGGAGCTATTCCCTCAGACAGCCGATTTGCATTGGAGAACTACAAAgtattccttt ... tctttcgcagAACCTTGCCAATAGATCACTTGTGGATGACGTGCTGAGG
EST: ACAAGGGAGCTATTCCCTCAGACAGCCGATTTGCATTGGAGAACTACAAA AACCTTGCCAATAGATCACTTGTGGATGACGTGCTGAGGAAAGTTAGCGGTEST: gi|47831309|gb|CK120993.1|CK120993
genomic: ACAAGGGAGCTATTCCCTCAGACAGCCGATTTGCATTGGAGAACTACAAAgtattccttt ... tctttcgcagAACCTTGCCAATAGATCACTTGTGGATGACGTGCTGAGGAAAGTTAGCGGT
EST: ACAAGGGAGCTATTCCCTCAGACAGCCGATTTGCATTGGAGAACTACAAA AACCTTGCCAATAGATCACTTGTGGATGACGTGCTGAGGAAAGTTAGCGGTEST: gi|124975210|gb|EL048721.1|EL048721
genomic: ACAAGGGAGCTATTCCCTCAGACAGCCGATTTGCATTGGAGAACTACAAAgtattccttt ... tctttcgcagAACCTTGCCAATAGATCACTTGTGGATGACGTGCTGAGGAAAGTTAGCGGT
EST: GCTATTCCCTCAGACAGCCGATTTGCTATTGGAGAACTACAAA AACCTTGCCAATAGATCACTTGTGGATGACGTGCTGAGGAAAGTTAGCGGTEST: gi|116446909|gb|EG489501.1|EG489501
genomic: GCTATTCCCTCAGACAGCCGATTTGC-ATTGGAGAACTACAAAgtattccttt ... tctttcgcagAACCTTGCCAATAGATCACTTGTGGATGACGTGCTGAGGAAAGTTAGCGGT
EST: ACAAGGGAGCTATTCCCTCAGACAGCCGATTTGCATTGGAGAACTACAAA AACCTTGCCAATAGATCACTTGTGGATGACGTGCTGAGGAAAGTTAGCGGT
genomic: ACAAGGGAGCTATTCCCTCAGACAGCCGATTTGCATTGGAGAACTACAAAgtattccttt ... tctttcgcagAACCTTGCCAATAGATCACTTGTGGATGACGTGCTGAGGAAAGTTAGCGGT
cttctgcatctaactaatacactggtacatgtcttggttttaatttctttcgcagAACCTTGCCAATAGATCACTTGTGGATGACGTGCTGAGGAAAGTTAGCGGTCTCAAACCCATTGCAGATGAGCTAGGTGTAACCTTGGCTCAGCTTGCAA
ttttaatttctttc CT-rich tract
ttttaatttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattccttttttttcctttttcttgtgtattcttggtcatatttgctaagacctcaatctgcttctgcatctaactaatacactggtacatgtcttggttttaatttctttcgcagAACCTTGCCAATAGATCACTTGTGGATGACGTGCTGAGGAAAGTTAGCGGTCTCAAACCCATTGCAGATGAGCTAGGTGTAACCTTGGCTCAGCTTGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT