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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCAACAAATTACGGAGGCATGGGGAGCTGCTGACCGGTTGGATTTGGTTGGTCCAATTGTCGAACAGCCAGAATACAACATGTTCGCTAGGCACAAAgtttgtaatctgactctctttttctttaatttactttcatgtttgcgtcttatcttgtacagtcttaagttgttgtagtctcgtgttatgtagctcaagttatgctcttctgttatgtag

Basic information

species Arabidopsis thaliana
transcript AT1G04690.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124998058|gb|EL070327.1|EL070327
EST:     CGAACAGCCAGAATACAACATGTTCGCTAGGCACAAA                         GTTGAGACAGAGTTTCTTCCTCTGTACACCAACCATGGTATAGGTCTCACT
genomic: CGAACAGCCAGAATACAACATGTTCGCTAGGCACAAAgtttgtaatc ... tgttatgtagGTTGAGACAGAGTTTCTTCCTCTGTACACCAACCATGGTATAGGTCTCACT
EST: gi|86077892|gb|DR373649.1|DR373649
EST:     GTCCAATTGTCGAACAGCCAGAATACAACATGTTCGCTAGGCACAAA                         GTTGAGACAGAGTTTCTTCCTCTGTACACCAACCATGGTATAGGTCTCACT
genomic: GTCCAATTGTCGAACAGCCAGAATACAACATGTTCGCTAGGCACAAAgtttgtaatc ... tgttatgtagGTTGAGACAGAGTTTCTTCCTCTGTACACCAACCATGGTATAGGTCTCACT
EST: gi|47831309|gb|CK120993.1|CK120993
EST:     TTGGTCCAATTGTCGAACAGCCAGAATACAACATGTTCGCTAGGCACAAA                         GTTGAGACAGAGTTTCTTCCTCTGTACACCAACCATGGTATAGGTCTCACT
genomic: TTGGTCCAATTGTCGAACAGCCAGAATACAACATGTTCGCTAGGCACAAAgtttgtaatc ... tgttatgtagGTTGAGACAGAGTTTCTTCCTCTGTACACCAACCATGGTATAGGTCTCACT
EST: gi|116446909|gb|EG489501.1|EG489501
EST:     TTGGTCCAATTGTCGAACAGCCAGAATACAACATGTTCGCTAGGCACAAA                         GTTGAGACAGAGTTTCTTCCTCTGTACACCAACCATGGTATAGGTCTCACT
genomic: TTGGTCCAATTGTCGAACAGCCAGAATACAACATGTTCGCTAGGCACAAAgtttgtaatc ... tgttatgtagGTTGAGACAGAGTTTCTTCCTCTGTACACCAACCATGGTATAGGTCTCACT