1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAAAGAAGGTATGGAGAGGAAGGATGTGATGTCCAAGAATGTTTCCATCTACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAGgtgatacgatctgtttgctttttaagttaaatgaagccactgcatccaatcttctctgttcattggagtgtaacagatgctttgtgttctctattgggttctagtttacgactctcttgctcacacattcgctctcgttttgtcttttttttttcag
species | Arabidopsis thaliana |
transcript | AT1G04410.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAG GTTCTTGTTGTGGCCAACCCGGCAAAACACCAACGCATTGAEST: gi|124733580|gb|EH824982.1|EH824982
genomic: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAGgtgatacgat ... tttttttcagGTTCTTGTTGTGGCCAACCCGGCAAA-CACCAACGCATTGA
EST: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAG GTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGEST: gi|47829836|gb|CK119520.1|CK119520
genomic: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAGgtgatacgat ... tttttttcagGTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGG
EST: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAG GTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAAEST: gi|47830669|gb|CK120353.1|CK120353
genomic: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAGgtgatacgat ... tttttttcagGTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAA
EST: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAG GTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAAEST: gi|47828241|gb|CK117925.1|CK117925
genomic: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAGgtgatacgat ... tttttttcagGTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAA
EST: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAG GTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAAEST: gi|301503095|gb|HO208635.1|HO208635
genomic: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAGgtgatacgat ... tttttttcagGTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAA
EST: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAG GTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAAEST: gi|47829133|gb|CK118817.1|CK118817
genomic: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAGgtgatacgat ... tttttttcagGTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAA
EST: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAG GTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAAEST: gi|47829241|gb|CK118925.1|CK118925
genomic: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAGgtgatacgat ... tttttttcagGTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAA
EST: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAG GTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCANGGAAEST: gi|125191671|gb|EL206625.1|EL206625
genomic: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAGgtgatacgat ... tttttttcagGTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAA
EST: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAG GTTCTTGTTGTGGCCAACCCGGCAAACACCAACGEST: gi|125232877|gb|EL246962.1|EL246962
genomic: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAGgtgatacgat ... tttttttcagGTTCTTGTTGTGGCCAACCCGGCAAACACCAACG
EST: CTCCTAACTGCAAG GTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTACAAGGAEST: gi|47828264|gb|CK117948.1|CK117948
genomic: CTCCTAACTGCAAGgtgatacgat ... tttttttcagGTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCT-CAAGGA
EST: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAG GTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAAEST: gi|47832292|gb|CK121976.1|CK121976
genomic: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAGgtgatacgat ... tttttttcagGTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAA
EST: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAG GTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAAEST: gi|125223552|gb|EL237637.1|EL237637
genomic: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAGgtgatacgat ... tttttttcagGTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAA
EST: CTCCTAACTGCAAG GTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAAEST: gi|301501445|gb|HO206985.1|HO206985
genomic: CTCCTAACTGCAAGgtgatacgat ... tttttttcagGTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAA
EST: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAG GATCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAAEST: gi|124891668|gb|EH970570.1|EH970570
genomic: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAGgtgatacgat ... tttttttcagGTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAA
EST: CAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAG GTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGEST: gi|116378554|gb|EG421146.1|EG421146
genomic: CAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAGgtgatacgat ... tttttttcagGTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGG
EST: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAG GTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAAEST: gi|125312257|gb|EL326342.1|EL326342
genomic: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAGgtgatacgat ... tttttttcagGTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAA
EST: AGAAGCATGCCGCTCCTAACTGCAAG GTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAAEST: gi|47828810|gb|CK118494.1|CK118494
genomic: AGAAGCATGCCGCTCCTAACTGCAAGgtgatacgat ... tttttttcagGTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAA
EST: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAG GTTCTTGGTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAAEST: gi|116378552|gb|EG421144.1|EG421144
genomic: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAGgtgatacgat ... tttttttcagGTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAA
EST: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAG GTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAAEST: gi|47831346|gb|CK121030.1|CK121030
genomic: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAGgtgatacgat ... tttttttcagGTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAA
EST: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAG GTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAA
genomic: ACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAGgtgatacgat ... tttttttcagGTTCTTGTTGTGGCCAACCCGGCAAACACCAACGCATTGATCCTCAAGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAGAAGGTATGGAGAGGAAGGATGTGATGTCCAAGAATGTTTCCATCTACAAGTCTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAGgtgatacgatctgtttgctttttaagttaaatgaagccactgcatccaatcttctctgttcattggagtgtaacagatgctttgtgttctctattgggttctagtttacgactctcttgctcacacattcgctctcgttttgtcttttttttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC