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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTAGAAAAGGTTATAGCTTTGCTAGACTTGATGGTTCTACTCCAACTAATCTGCGACAGTCTCTTGTGGATGATTTCAATGCGAGTCCTAGCAAACAGgtttttattaaccgaacccttttcgatagagatcatgtttcttcttacctacttctgatctgatgattaaatgagcttttatgtgtcag

Basic information

species Arabidopsis thaliana
transcript AT1G03750.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G03750.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA12G13180.1 (Glycine max), 5'ss of exon 5
AATTAGAAAAGGTTATAGCTTTGCTAGACTTGATGGTTCTACTCCAACTAATCTGCGACAGTCTCTTGTGGATGATTTCAATGCGAGTCCTAGCAAACAGgtttttattaaccgaacccttttcgatagagatcatgtttcttcttacctacttctgatctgatgattaaatgagcttttatgtgtcag
 ||  ||||||| ||  ||||  | ||||||||||| || |||||||||||| | || || ||||| || |||||||||||  | ||||| |||||||| || | | | || |  |    ||  |||  ||  ||| ||||   ||  | | || ||||  |  | ||   |    |||||        
CATACGAAAAGGCTACTGCTTCTCAAGACTTGATGGCTCCACTCCAACTAATTTACGTCAATCTCTGGTTGATGATTTCAACTCAAGTCCAAGCAAACAAgtatatctcaaacctaatagtt--gattaag--catttttccaatt--caatttgtgattgggggcttgtttattattttag-------

upper sequence: AT1G03750.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv12s0028g03440.t01 (Vitis vinifera), 5'ss of exon 5
AATTAGAAAAGGTTATAGCTTTGCTAGACTTGATGGTTCTACTCCAACTAATCTGCGACAGTCTCTTGTGGATGATTTCAATGCGAGTCCTAGCAAACAGgtttttattaa---ccgaacccttttcgatagaga-tcatgtttc--ttcttacctacttctgatctgatgattaaatgagcttttatgtgtcag
 ||  | ||||||||| ||||  | |||||||||||||| |||||||| ||  |||| || |||||||| ||||| |||||  | ||||| ||||| || ||   |||| |   | |||     || |  ||| | | ||| |||  || |    |    || || |  || || |                   
TATACGCAAAGGTTATTGCTTCTCAAGACTTGATGGTTCCACTCCAACCAACTTGCGTCAATCTCTTGTTGATGACTTCAACTCAAGTCCAAGCAAGCAAgtaaatattcatatcagaaattgattaggaagaaacttatgattcaattttctgttgggcctaatttcttgtttcag------------------