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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATGTTAAACATTGTGGGAAAATGAGAGCTTTGGAGAAGTTGATGGCTTCTTGGATTTCAAAGGGTGATAAGATACTTCTATTCAGTTACTCTGTCAGgttagtttttggatttagtttgatgaatgtaggagaatatttgtcgttgcaagcttttgatccattaaattacag

Basic information

species Arabidopsis thaliana
transcript AT1G03750.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G03750.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv12s0028g03440.t01 (Vitis vinifera), 5'ss of exon 4
GTGATGTTAAACATTGTGGGAAAATGAGAGCTTTGGAGAAGTTGATGGCTTCTTGGATTTCAAAGGGTGATAAGATACTTCTATTCAGTTACTCTGTCAGgtta-gtttttggatttagtttgatgaatgtaggaga-----------atatttgtc--gttgcaagcttttgatccattaaattacag-----------
||||||||||||| ||||| || ||| |||| ||||| ||||| |||   |||||| ||||| | ||||| || || ||||| ||||||||||| ||||||| | |    |  ||| | || |  | |  |   ||            || ||||||  ||| | |  | ||  | || ||||| || |           
GTGATGTTAAACACTGTGGCAAGATGCGAGCATTGGAAAAGTTAATGTTGTCTTGGGTTTCACATGGTGACAAAATTCTTCTGTTCAGTTACTCCGTCAGgtgatgaccatcaattcacttagcagtacctttaagtgcctgttttacatttttgtctagtttctaattattatttcactaaataactgagtatgttttc