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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtttttggatttagtttgatgaatgtaggagaatatttgtcgttgcaagcttttgatccattaaattacagGATGCTGGACATACTGGAAAAGTTTCTAATTAGAAAAGGTTATAGCTTTGCTAGACTTGATGGTTCTACTCCAACTAATCTGCGACAGTCTCTTGTGGAT

Basic information

species Arabidopsis thaliana
transcript AT1G03750.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G03750.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA12G13180.1 (Glycine max), 3'ss of exon 4
--------------------------gttagtttttggatttagtttgatgaatgtaggagaatatttgtcgttgcaagcttttgatccattaaattacagGATGCTGGACATACTGGAAAAGTTTCTAATTAGAAAAGGTTATAGCTTTGCTAGACTTGATGGTTCTACTCCAACTAATCTGCGACAGTCTCTTGTGGAT
                            |  | | || |  |   ||| |   | ||      | |||   | ||      ||||| | | |   || ||||||||||||||||||||| || ||||| ||  ||||||| ||  ||||  | ||||||||||| || |||||||||||| | || || ||||| || |||
gcactgaactttgttgacattagtaaactgctctctgcaagtgccttggtttttttaaacatcttttttctgctgtttaactttgagctactct-ttccagGATGCTGGACATACTGGAGAAATTTCTCATACGAAAAGGCTACTGCTTCTCAAGACTTGATGGCTCCACTCCAACTAATTTACGTCAATCTCTGGTTGAT

upper sequence: AT1G03750.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv12s0028g03440.t01 (Vitis vinifera), 3'ss of exon 4
---------------gttagtttttggatttagtttgatgaatgtaggagaatatttgtcgttgcaagcttttgatccattaaatt------------acagGATGCTGGACATACTGGAAAAGTTTCTAATTAGAAAAGGTTATAGCTTTGCTAGACTTGATGGTTCTACTCCAACTAATCTGCGACAGTCTCTTGTGGAT
                | |||||||   |||   ||  |   |  |  | |  |     || | ||   | || |  | | || ||            |||||||| ||||||| ||||| |||||||| ||  | ||||||||| ||||  | |||||||||||||| |||||||| ||  |||| || |||||||| |||
atattctcttttgctttgagtttttactttttcctttgttc-tccaccaaaccaccccccggt-cactttattaactcctgaagttgagatgttttcaacagGATGTTGGACATTCTGGAGAAGTTTCTTATACGCAAAGGTTATTGCTTCTCAAGACTTGATGGTTCCACTCCAACCAACTTGCGTCAATCTCTTGTTGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatgaatgtaggagaatatttgtcgttgcaagcttttgatccattaaattacagGATGCTGGACATACTGGAAAAGTTTCTAATTAGAAAAGGTTATAGCTTTGCTAGACTTGATGGTTCTACTCCAACTAATCTGCGACAGTCTCTTGTGGAT
                                  ttttgat  putative branch site (score: 4)
                                           attaaattaca  TA-rich tract