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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacgaaaagattctgtctttgaaaaaaacaaacaaaatattctcattttgcaaaacagtgatgttctcttaacttgatagGAAGATTTTGATACACGGGCTCAATCGGTTGTAGCCCAATCGAAGCTGAAAGGTGAAATCAGGTTCAAGGCCGAGACTGTTTCGCCTGGTGAATGGGAAA

Basic information

species Arabidopsis thaliana
transcript AT1G02910.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125231921|gb|EL246006.1|EL246006
EST:     GCTTCTTCAAAGGCAGCTACATCTCTTCCTTCAATT-GG                         GAAGATTTTGATACACGGGCTCAATCGGTTGTAGCCCAATCGAAGCTGAAA
genomic: GCTTCTTCAAAGGCAGCTACATCTCTTCCTTCAATTGGGgtaacgaaaa ... aacttgatagGAAGATTTTGATACACGGGCTCAATCGGTTGTAGCCCAATCGAAGCTGAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacaaacaaaatattctcattttgcaaaacagtgatgttctcttaacttgatagGAAGATTTTGATACACGGGCTCAATCGGTTGTAGCCCAATCGAAGCTGAAAGGTGAAATCAGGTTCAAGGCCGAGACTGTTTCGCCTGGTGAATGGGAAA
                                         tcttaac  putative branch site (score: 2)
                                      ttctctta  CT-rich tract
        aaaatattctcatttt  TA-rich tract