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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttgcactctccttttgtatatctttttcatatcccaaggaaaactttctcattggtgaaaatttcttccaattgtttcagGCTAGGTTAGGCGGGGAAGATATTGGCGATAATTTCCGGAGAGATCTGAAACTTATCAGTGAAGTACGAGCACCGTTTCGTGGCGTTAGAAAATTCTTTT

Basic information

species Arabidopsis thaliana
transcript AT1G02910.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G02910.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA19G39720.2 (Glycine max), 3'ss of exon 3
-------------gtcttgcactctccttttgtatatctttttcatatcccaaggaaaactttctcattggtgaaaatttct-tccaattgttt---cagGCTAGGTTAGGCGGGGAAGATATTGGCGATAATTTCCGGAGAGATCTGAAACTTATCAGTGAAGTACGAGCACCGTTTCGTGGCGTTAGAAAATTCTTTT
              ||   || | |  || ||| ||  |   |  ||       |||   ||   ||||| |    |||||| | |     | |   ||||||||| | || ||||||||||| ||| | | ||| ||| ||||||| |||||||| |||||||| | |||||| |||||||| ||||| | ||||||||
gaaaggaacttatctccctcattataattctgtctaattgaatgttaaatatttgaagttttaaacattgattcttatttctgttctgccatgtaaccagGCTAGGCTGGGTGGGGAAGATATCGGCTACAGTTTTCGGCGAGATCTAAAACTTATTAGTGAAGTCCAAGCACCATTTCGTGGGGTTAGGAGATTCTTTT

upper sequence: AT1G02910.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA03G37100.1 (Glycine max), 3'ss of exon 3
-------------gtcttgcactctccttttgtatatctttttcatatcccaaggaaaactttctcattggtgaaaatttct-tccaattgttt---cagGCTAGGTTAGGCGGGGAAGATATTGGCGATAATTTCCGGAGAGATCTGAAACTTATCAGTGAAGTACGAGCACCGTTTCGTGGCGTTAGAAAATTCTTTT
              ||   || | |  || ||| ||  |   |   |       |||   |||  ||||| | |  ||| || |||     | |   ||||||||| | || ||||||||||| ||| | | ||| ||| ||||||| |||||||| |||||||| | |||||| |||||||| ||||| | ||||||||
gaaaggaacttatctccctcattataattctgtctaattgaatgtaaaatatgagaagtttttagcattgattattattactgtcctgccatgtaaccagGCTAGGCTGGGTGGGGAAGATATCGGCTACAGTTTTCGGCGAGATCTAAAACTTATTAGTGAAGTCCAAGCACCATTTCGTGGGGTTAGGAGATTCTTTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcatatcccaaggaaaactttctcattggtgaaaatttcttccaattgtttcagGCTAGGTTAGGCGGGGAAGATATTGGCGATAATTTCCGGAGAGATCTGAAACTTATCAGTGAAGTACGAGCACCGTTTCGTGGCGTTAGAAAATTCTTTT
                                              ttgtttc  CT-rich tract
                                aaaatttctt  TA-rich tract