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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcatagacaccacttgaatcttaaattcctttttttctctgttatgtgagtaagctttcggaacagcaatgtgcagGTATTGTTGTTATGGTTTCATTGTTCCTTTGGGAAAACAAGAAAGAGGAAGAACAAATGGTTCAAATAACTCGAGACGAAACTCTTTCCCGGTTGCCTCT

Basic information

species Arabidopsis thaliana
transcript AT1G02910.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G02910.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA03G37100.1 (Glycine max), 3'ss of exon 4
-------------------gtgagtcatagacaccacttgaatcttaaattcctttttttctctgttatgtgagtaagctttcggaacagcaatgtgcagGTATTGTTGTTATGGTTTCATTGTTCCTTTGGGAAAACAAGAAAGAGGAAGAACAAATGGTTCAAATAACTCGAGACGAAACTCTTTCCCGGTTGCCTCT
                    | | |   |   |  |  |||      |  |  |   || ||   |||  ||| |||||    | | |||||||||||||||||||||||| | ||  |||| ||| ||||||| || || |||||||| |||||| | |  |||||| ||||||| || || || ||  |||||||| |
gtgtttgttctctttcaagataattgcaatgtagtatctgagaaaataccttttacattgcttcattaaatgactaagcaccagaatcagcaatgtgcagGTATTGTTGTTCTTGTGGCATTATTCTTTTGGGACAATAAAAAAGAGGAGGAACAACTTGCACAAATATCTCGAGATGAGACACTATCAAGGTTGCCTTT

upper sequence: AT1G02910.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA19G39720.2 (Glycine max), 3'ss of exon 4
----------------gtgagtcataga---caccacttgaatcttaaattcctttttttctctgttatgtgagtaagctttcggaacagcaatgtgcagGTATTGTTGTTATGGTTTCATTGTTCCTTTGGGAAAACAAGAAAGAGGAAGAACAAATGGTTCAAATAACTCGAGACGAAACTCTTTCCCGGTTGCCTCT
                |  | |   ||     |  |  |||      |  |  |   || ||   |||  ||| |||||    | | ||||||||||||||||| |||||| | ||  |||| ||| ||||||| || || |||||||| |||||| | |  |||||| |||||||||| || || ||  |||||||| |
atttgttttttttcaagataattgcagggtgtaatatctgagaaaataccttttacattgcttcattaaatgactaagcaccggaatcagcaatgtgcagGTATCGTTGTTCTTGTGGCATTATTCTTTTGGGACAATAAAAAAGAGGAGGAACAACTCGCACAAATATCTCGAGACGAGACACTATCAAGGTTGCCTTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaattcctttttttctctgttatgtgagtaagctttcggaacagcaatgtgcagGTATTGTTGTTATGGTTTCATTGTTCCTTTGGGAAAACAAGAAAGAGGAAGAACAAATGGTTCAAATAACTCGAGACGAAACTCTTTCCCGGTTGCCTCT
        tttttttct  TA-rich tract