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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAATCACAGCAGAGAGTGTGATTTACAGTTTTGGCACTCTTCTGCTTGATCTTCTCACCGGAAAGCATATTCCTCCTAGCCATgtaagtgcccatggtagctactttaatcgtttcttgaattctctttattaattatctcagccttttgctgtgtgttttag

Basic information

species Arabidopsis thaliana
transcript AT1G01740.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G01740.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA03G01300.2 (Glycine max), 5'ss of exon 7
GGAGAATCACAGCAGAGAGTGTGATTTACAGTTTTGGCACTCTTCTGCTTGATCTTCTCACCGGAAAGCATATTCCTCCTAGCCATgtaagtg---cccat-----ggtagctactttaatcg----tttcttgaattctctttattaattatctcagccttttgctgtgt---gttttag-----
||||| | ||| |||| ||||| || || ||||||||||||||||||||||| |||||||  || |||||||| || || || |||||||||    |  ||     ||||   | | |    |    ||   |   |   | | |    ||   ||||    ||  || ||   ||||  |     
GGAGAGTAACACCAGAAAGTGTAATATATAGTTTTGGCACTCTTCTGCTTGACCTTCTCAGTGGGAAGCATATCCCCCCAAGTCATgtaagtcattcttatcatccggtaaagaatatgggtgcaggttaacttggtcaacctgacaggttgattcagatggtttatgagttcagtttgggtccta

upper sequence: AT1G01740.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv15s0046g02900.t01 (Vitis vinifera), 5'ss of exon 7
GGAGAATCACAGCAGAGAGTGTGATTTACAGTTTTGGCACTCTTCTGCTTGATCTTCTCACCGGAAAGCATATTCCTCCTAGCCATgtaagtgcccatggtagctactttaatcgtttcttgaattct-ctttattaattatctcagccttttgctgtgtgttttag--------------------
| ||| | ||| |||| ||||| || || || || ||||||||| ||||||| || ||||  ||||||||||| ||||| |||||||||||| |   |           |     | |  ||||   | ||||||   || |     |   ||||| || |||  |                     
GAAGAGTAACACCAGAAAGTGTAATATATAGCTTCGGCACTCTTTTGCTTGACCTGCTCAGTGGAAAGCATATCCCTCCCAGCCATgtaagtacttgtttcttgcctagtggcattcttatgaagcatactttatctgttctgcagtcggattgct-tgagttggattggaatcaaggtgtagttag