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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCCAAATGTTGTCTATCAAGGGAAATTGGAGAATCATATGAAGATTGCTATCAAGCGCTTTTCTGGAACTGCCTGGCCTGATCCTCGCCAATTCCTGgtatggcatgtacctttcagtttatctagttgccaattctcaaatctattaactttggatatgtctgtttccag

Basic information

species Arabidopsis thaliana
transcript AT1G01740.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G01740.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA03G01300.2 (Glycine max), 5'ss of exon 3
AGCTCCAAATGTTGTCTATCAAGGGAAATTGGAGAATCATATGAAGATTGCTATCAAGCGCTTTTCTGGAACTGCCTGGCCTGATCCTCGCCAATTCCTGgtatggcatgtacctttcagtttatctagttgccaatt---ctcaaatctattaactttgg-atatgtctgtttccag-----------------------
 |||||||||||||| ||| |||| || ||||||||||| |||| ||||||| | ||||| |||  | | | ||| ||||||||| |||| || ||  |||||         |    || ||  | |  |   |||     |||  | |||| || | |    ||   |||||                            
GGCTCCAAATGTTGTTTATAAAGGAAAGTTGGAGAATCAAATGAGGATTGCTGTTAAGCGGTTTAATAGGAATGCTTGGCCTGATGCTCGGCAGTTTTTGgta-aattcacccgccccaattggtttcttcttcaaccttgctcttaactatcaattctcctgtagacctgttcatgaccttgcattgcacagatgcatta