Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATGGCCAATTTACTCGGTTATTGCTGTGAAGGCGGCGAGAGGTTACTTGTGGCTGAGTTTATGCCTAATGAGACACTAGCCAAACACCTTTTCCACTgtaaaaagaaaatgcctttgatcaattgtctttcgattttctttcaagattttctcctaagatttgcttaccacttttatcatctaccag

Basic information

species Arabidopsis thaliana
transcript AT1G01740.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G01740.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA07G07850.2 (Glycine max), 5'ss of exon 4
AGAATGGCCAATTTACTCGGTTATTGCTGTGAAGGCGGCGAGAGGTTACTTGTGGCTGAGTTTATGCCTAATGAGACACTAGCCAAACACCTTTTCCACTgtaaaaag----aaaatgcctttgatcaattgtctttcgattt---tctttcaagattttctcctaagatt-tgcttaccacttttatcatctaccag--
||  |||| ||||| || |||| |||||||||||| |  |||||||| |||||||| || | |||||| ||||| ||||| || || |||||||| || ||||| |         |||| |||  |  |||   ||  |   |     | | |  | | | || |||  || || ||  |  |||| |    |       
AGGTTGGCAAATTTGCTTGGTTGTTGCTGTGAAGGAGAGGAGAGGTTGCTTGTGGCAGAATATATGCCCAATGAAACACTTGCAAAGCACCTTTTTCATTgtaagagctccttttatgcattttttttattcctttaagtgctgaacatctgatcactatgtcttaaatttatggtttacggttttgttgatttttgctt

upper sequence: AT1G01740.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA03G01300.2 (Glycine max), 5'ss of exon 4
AGAATGGCCAATTTACTCGGTTATTGCTGTGAAGGCGGCGAGAGGTTACTTGTGGCTGAGTTTATGCCTAATGAGACACTAGCCAAACACCTTTTCCACTgtaaaaag----aaaatgc---ctttgatcaattgtctttcgattttctttcaagattttctcc-------taagatttgcttaccacttttatcatctaccag
||  |||| ||||| || |||| |||||||||||| |  |||||||| |||||||| || | |||||| ||||| ||||| || || |||||||| || ||||| |         ||||    ||| |||  ||   | | ||   |||     |  | |||         ||| || |  ||  |  |||| |   ||     
AGGTTGGCAAATTTGCTTGGTTGTTGCTGTGAAGGGGAGGAGAGGTTGCTTGTGGCAGAATATATGCCCAATGAAACACTTGCAAAGCACCTTTTTCATTgtaagagctccttttatgcattttttaatcctttaagtgttgaacatctgattggtatgtcttaaatttaataatatgtagtttacggttttgttgcctt----