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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGTGATGGAATATGAAGAGCATGAGAAGAGAGCATGGAGTGTTGATTTTTCTCGCACAGACTCTTCAATGCTAGTATCTGGGAGTGATGATTGCAAGgtatttggaagttaatattgtaaaattacattctcattccgaaactaagagagaaaagcttggtgattttctcaaatgtcaagtaccaaaatcactttat...

Basic information

species Zea mays
transcript GRMZM2G104920_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104920_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os02g53140.1 (Oryza sativa), 5'ss of exon 9
AGTGTGATGGAATATGAAGAGCATGAGAAGAGAGCATGGAGTGTTGATTTTTCTCGCACAGACTCTTCAATGCTAGTATCTGGGAGTGATGATTGCAAGgtatttggaagttaatattgtaaaattacattc-tcattccgaaactaagagagaaaagcttggtgattttctcaaatgtcaagtaccaaaatcactttat--
||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||  | || ||||||||||||||||||||||||||||||||||||| || ||   || ||| || ||| ||  | |||||  ||   ||  ||||||  |||   | ||    ||||       | || ||      |||  
AGTGTGATGGAGTATGAAGAACATGAAAAGAGAGCATGGAGTGTTGATTTTTCTCGAACAGAACCCTCGATGCTAGTATCTGGGAGTGATGATTGCAAGgtatttgcaaatttcaatggtacaactacttttgttattcccgaa---agcaagaaaactttgcgtagttctcaaaatacagtaaaacataacttggatatat

upper sequence: GRMZM2G104920_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA14G05430.1 (Glycine max), 5'ss of exon 9
AGTGTGATGGAATATGAAGAGCATGAGAAGAGAGCATGGAGTGTTGATTTTTCTCGCACAGACTCTTCAATGCTAGTATCTGGGAGTGATGATTGCAAGgtatttggaagttaatattgtaaaattacattctcattccgaaactaagagagaaaagcttggtgattttctcaaatgtcaagtaccaaaatcactttat
||| | |||||||||||||||||||| ||| | ||||||||||||||||||||  | |||||| | || ||||| |||||||| || ||||| || |||||| ||| ||  |    ||| ||  ||   | |   || |   |  | |       |  ||       || | |||||  ||  |           ||||
AGTTTAATGGAATATGAAGAGCATGAAAAGCGTGCATGGAGTGTTGATTTTTCAAGAACAGACCCCTCTATGCTTGTATCTGGTAGCGATGACTGTAAGgtacttgaaacatttatttggaagtttttgtgcaagtttccctaaaatgcttctgtaatttccaatacttttgaaatgaaaatcatgctttctgaattat

upper sequence: GRMZM2G104920_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA02G43540.2 (Glycine max), 5'ss of exon 9
AGTGTGATGGAATATGAAGAGCATGAGAAGAGAGCATGGAGTGTTGATTTTTCTCGCACAGACTCTTCAATGCTAGTATCTGGGAGTGATGATTGCAAGgtatttggaagttaatattgtaaaattacattctcattccgaaactaagagagaaaagcttggtgattttctcaaatgtcaagtac---caaaatcactttat--
||| | |||||||||||||||||||| ||| | ||||||||||| || |||||  | |||||  | || ||||| |||||||| || ||||| || |||||| |  ||| ||     || ||  ||   | |   || |   |  | |       |  ||      ||| | |||||  ||  |     || ||   |||||  
AGTTTAATGGAATATGAAGAGCATGAAAAGCGTGCATGGAGTGTAGACTTTTCAAGAACAGATCCCTCTATGCTTGTATCTGGTAGCGATGACTGTAAGgtactctgaaatt-----tggaagtttttgtgccagtttccctaaaatgcttctgtaatttccaatattttttaaatgaaaatgatgcttaacatatgtttatta

upper sequence: GRMZM2G104920_T02 (Zea mays), 5'ss of exon 8
lower sequence: AT2G32950.1 (Arabidopsis thaliana), 5'ss of exon 9
AGTGTGATGGAATATGAAGAGCATGAGAAGAGAGCATGGAGTGTTGATTTTTCTCGCACAGACTCTTCAATGCTAGTATCTGGGAGTGATGATTGCAAGgtatttggaagttaatattgtaaaattacattctcattccgaaactaagagagaaaagcttggtgattttctcaaatgtcaagtaccaaaatcactttat--
||| | ||||| ||||||||||| || ||  | || ||||||||||| ||||| || |||||  | |||||||| |||||||| ||||| || |||||||||  |  |  |  ||||| |    |  ||   |   ||  | | |  |  |       |     |      | | | | |  || |         ||||  
AGTCTTATGGAGTATGAAGAGCACGAAAAACGTGCCTGGAGTGTTGACTTTTCACGAACAGAACCATCAATGCTTGTATCTGGTAGTGACGACTGCAAGgtaaat--atctccatattttccgttatcacctttcatctcacattgggctatgtctcatataaaaagaatactacttttagatatctcctagctcttataa

upper sequence: GRMZM2G104920_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv10s0523g00030.t01 (Vitis vinifera), 5'ss of exon 9
AGTGTGATGGAATATGAAGAGCATGAGAAGAGAGCATGGAGTGTTGATTTTTCTCGCACAGACTCTTCAATGCTAGTATCTGGGAGTGATGATTGCAAGgtatttggaagttaatat---tgtaaaatt--acattctcattccgaaactaagagagaaaagcttggtgattttctcaaatgtcaagtaccaaaatcactttat
|||||||||||||| || |||||||| ||| |||||||||||||||||||||| ||||| ||  |||||||||| ||||| || |||||||| ||||||||| |||||| || | ||   ||  ||||   ||||| |     |   ||  | | |   ||| |||   || ||| ||  | |     ||     |        
AGTGTGATGGAATACGAGGAGCATGAAAAGCGAGCATGGAGTGTTGATTTTTCACGCACTGAACCTTCAATGCTCGTATCCGGCAGTGATGACTGCAAGgtagttggaatttgaaatctatgggaaatggaacattgtgtgatcttgacatatacactgaagattgactatattc-catgtatgggtcacatgtgtgggg----

upper sequence: GRMZM2G104920_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv12s0059g01420.t01 (Vitis vinifera), 5'ss of exon 9
AGTGTGATGGAATATGAAGAGCATGAGAAGAGAGCATGGAGTGTTGATTTTTCTCGCACAGACTCTTCAATGCTAGTATCTGGGAGTGATGATTGCAAGgtatttggaag---ttaatat--tgtaaa---attacattctcattccgaaactaagagagaaaagcttggtgattttctcaaatgtcaagtaccaaaatcactttat
|||||||||||||||||||||||||| ||  | |||||||||||||||||||| ||||||||  | |||| ||| |||||||| ||||||||||| ||||||||    |    ||| |||  | ||||   | |  ||  | ||| |  || | |   |  | | | || | | || || ||||    |  |   ||||        
AGTGTGATGGAATATGAAGAGCATGAAAAACGGGCATGGAGTGTTGATTTTTCACGCACAGAACCCTCAAGGCTTGTATCTGGCAGTGATGATTGTAAGgtattgcagaacacttagtatactttaaaccaaatctatcttgattgcttaagtgatctaagataccatgtttaattgctaaaata--gaaaaatgaaatgg------

upper sequence: GRMZM2G104920_T02 (Zea mays), 5'ss of exon 8
lower sequence: PP1S135_17V6.1 (Physcomitrella patens), 5'ss of exon 9
AGTGTGATGGAATATGAAGAGCATGAGAAGAGAGCATGGAGTGTTGATTTTTCTCGCACAGACTCTTCAATGCTAGTATCTGGGAGTGATGATTGCAAGgtatttggaagttaatattgtaaaattacattctcattccgaaactaagagagaaaagcttggtgattttctcaaatgtcaagt-accaaaatcactttat----------------------------------------------------
||  | ||||||||||| |||||||| ||||| || |||||||| |||||||| || || ||  |  | |||||||| || || ||||||||| ||||||||    |  |  ||| | || || |||    ||| |   | |  | |    |    | ||    |  || |  ||  ||| || |     |    |                                                        
AGCATTATGGAATATGAGGAGCATGAAAAGAGGGCCTGGAGTGTGGATTTTTCACGAACTGATCCGACCATGCTAGTCTCGGGAAGTGATGATGGCAAGgtaacctgttga-aatctggtgaacttaatcactctt---gtacttgatgcggttctgtttttcaagctttttcaaactcaggttatttggagttttccgcatcatgtttaatatgcggttgatccgaaatgtttttatgttactgtttgcag

upper sequence: GRMZM2G104920_T02 (Zea mays), 5'ss of exon 8
lower sequence: PP1S25_325V6.1 (Physcomitrella patens), 5'ss of exon 9
AGTGTGATGGAATATGAAGAGCATGAGAAGAGAGCATGGAGTGTTGATTTTTCTCGCACAGACTCTTCAATGCTAGTATCTGGGAGTGATGATTGCAAGgtat-ttggaagttaatattgtaaaattacattctcattccgaaactaagagagaaaagcttggtgattttctcaaatgtcaagtaccaaaatcactttat
||||| ||||| ||||| ||||| |||||| | || ||||||||||| ||||| || || ||  |||||||||| || ||||| ||||||||| ||||||| | |   | | |  | || |    || |  |   | |  |       |   |   |  ||| |     ||   |   |  |        || |  ||  
AGTGTCATGGAGTATGAGGAGCACGAGAAGCGTGCCTGGAGTGTTGACTTTTCCCGGACGGATCCTTCAATGCTGGTCTCTGGAAGTGATGATGGCAAGgtctgtctcatggtctttttcttgcctttctgttgaaatatggtttagtggatgtctactttgatcgccgtccatagcttagaagctggtgataaggttt-

upper sequence: GRMZM2G104920_T02 (Zea mays), 5'ss of exon 8
lower sequence: PP1S180_148V6.1 (Physcomitrella patens), 5'ss of exon 9
AGTGTGATGGAATATGAAGAGCATGAGAAGAGAGCATGGAGTGTTGATTTTTCTCGCACAGACTCTTCAATGCTAGTATCTGGGAGTGATGATTGCAAGgtat----ttgg--aag---ttaatattgtaaaattacat---tctcattccgaaac-taagagagaaaagcttggtgattttctcaaatgtcaagtaccaaaatcactttat-------------
||||||||||||||||| || ||||| ||| | || |||||  | ||||||||||| |||||  | |||||||| || ||||| ||||| ||| | |||||      || |  |||   |||    ||   ||  | |    | | || | | |   ||    | |||   ||||     ||  | | | |  | ||     || |||   |             
AGTGTGATGGAATATGAGGAACATGAAAAGCGTGCTTGGAGCATCGATTTTTCTCGTACAGATCCATCAATGCTGGTTTCTGGAAGTGACGATGGAAAGgtgcagccttagttaagcccttagctgtgatgaaccatagaggtttaatgctgtagtatactttataaacttttgggctggttaccgactctgcaataatgggattactgcgttgacacattgcag

upper sequence: GRMZM2G104920_T02 (Zea mays), 5'ss of exon 8
lower sequence: PP1S86_153V6.2 (Physcomitrella patens), 5'ss of exon 9
AGTGTGATGGAATATGAAGAGCATGAGAAGAGAGCATGGAGTGTTGATTTTTCTCGCACAGACTCTTCAATGCTAGTATCTGGGAGTGATGATTGCAAGgtatttggaagttaatattgtaaaatta-cattctcattcc----gaaactaagagagaaaag----ctt---------ggtgatttt----ctcaaatgtcaagtaccaaaatcactttat------------------------------------
||  | | ||| |||||||||||||| ||||| ||||||||||| |||||||| || || ||  |  | ||| |||| || || || |||||| |||||||  || |  |  ||| |||| |  ||| || ||   |  |    | | ||  |   || |||    |||         |||  ||||    ||      ||||| | | ||   | | | |                                    
AGCATAACGGAGTATGAAGAGCATGAAAAGAGGGCATGGAGTGTGGATTTTTCACGAACTGATCCCACTATGTTAGTCTCGGGAAGCGATGATGGCAAGgtgatttgttga-aatgttgtgattttatcactcaagtaactgatggaccttcgtttgacaaggccccttaaactggaaggtagtttttgggcttctgcatcaaggatcgaagcgaatgtgtagttgatcctgaagctttttgcattgtttcttgcag