1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GATGGAGCTTTACTACCTACTGAGCTGGAGGACCTTTTCTCAACAGCACCTGAAAAgtaagatgttagatgaatcaatcattcttcatatatattgcaactgtacttgtagtacatttgataatgctcatatatatggaaacatttggaaaatctt...
species | Zea mays |
transcript | GRMZM2G004459_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GCTTTACTACCTACTGAGCTGGAGGACCTTTTCTCAACAGCACCTGAAAA CCCATGGATTTCTGATCCCTATAAAGACTGTGCTGAAAAGAATGTGTTGGGEST: gi|60340644|gb|DN207617.1|DN207617
genomic: GCTTTACTACCTACTGAGCTGGAGGACCTTTTCTCAACAGCACCTGAAAAgtaagatgtt ... tatatttcagCCCATGGATTTCTGATCCCTATAAAGACTGTGCTGAAAAGAATGTGTTGGG
EST: GCTTTACTACCTACTGAGCTGGAGGACCTTTTCTCAACAGCACCTGAAAA CCCATGGATTTCTGATCCCTATAAAGACTGTGCTGAAAAGAATGTGTTGGGEST: gi|31358133|gb|CD442490.1|CD442490
genomic: GCTTTACTACCTACTGAGCTGGAGGACCTTTTCTCAACAGCACCTGAAAAgtaagatgtt ... tatatttcagCCCATGGATTTCTGATCCCTATAAAGACTGTGCTGAAAAGAATGTGTTGGG
EST: GCTTTACTACCTACTGAGCTGGAGGACCTTTTCTCA-CAGCACCTGAAAA CCCTTGGATTTCTGATCCCTATAAAGACTGTGCTGAAAT-AATGTGTTGGG
genomic: GCTTTACTACCTACTGAGCTGGAGGACCTTTTCTCAACAGCACCTGAAAAgtaagatgtt ... tatatttcagCCCATGGATTTCTGATCCCTATAAAGACTGTGCTGAAAAGAATGTGTTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGGAGCTTTACTACCTACTGAGCTGGAGGACCTTTTCTCAACAGCACCTGAAAAgtaagatgttagatgaatcaatcattcttcatatatattgcaactgtacttgtagtacatttgataatgctcatatatatggaaacatttggaaaatctt
- - - - - - - - - - - GCTGGA
- - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - GGAGGA