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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgtcgagcttgcttaaagttggccgttggaacttcctttttaagaaatgtaaggtttctttagctgggcattaggtgggcatggtttgttgcaagtattgactgctctggttgcctagttacatccacaaaatattcctgctcttgtgctgtgctgagtattggcatgcgatgcattgccgcag

Basic information

species Zea mays
transcript GRMZM2G553379_T06
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148980412|gb|EE027123.2|EE027123
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|78081870|gb|DV510282.1|DV510282
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAAACA-GGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAA-CAAGGTTCTGCAGAAGGAG
EST: gi|76020108|gb|DT947278.1|DT947278
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|148958634|gb|EC904889.2|EC904889
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|9731862|gb|BE510614.1|BE510614
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACAGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|149083437|gb|EE172757.2|EE172757
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|67016868|gb|CO445617.1|CO445617
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCA-CGGAAAG                         GAGA-GTCGCTGCAGGAGGAGAACAAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAA-Ggtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAG
EST: gi|76292652|gb|DV032220.1|DV032220
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|91052802|gb|EB163220.1|EB163220
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|71316727|gb|DR795037.1|DR795037
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|50325933|gb|CO521059.1|CO521059
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|148958084|gb|EC904274.2|EC904274
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|71425444|gb|DR806674.1|DR806674
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|86468156|gb|DY234526.1|DY234526
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|33466538|gb|CF243587.1|CF243587
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|37424944|gb|CF650206.1|CF650206
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|50324243|gb|CO519369.1|CO519369
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|71306905|gb|DR789608.1|DR789608
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|91876123|gb|EB406080.1|EB406080
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|78083431|gb|DV511824.1|DV511824
EST:     CTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: CTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|88749401|gb|DY533542.1|DY533542
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|148980413|gb|EE027124.2|EE027124
EST:     AACCTACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGG
EST: gi|89248658|gb|DY620444.1|DY620444
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|50333588|gb|CO528714.1|CO528714
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|76291866|gb|DV031434.1|DV031434
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|87156609|gb|DY401398.1|DY401398
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACAGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|71325988|gb|DR799676.1|DR799676
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|78088355|gb|DV516748.1|DV516748
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|211128460|gb|FL066357.1|FL066357
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACAGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|149001052|gb|EE038303.2|EE038303
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAAACAAG-TTCTGCAGAAGGAGCTCG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAA-CAAGGTTCTGCAGAAGGAGCTCG
EST: gi|101396804|gb|EB820328.1|EB820328
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|50323593|gb|CO518719.1|CO518719
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|71440936|gb|DR821986.1|DR821986
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|211020971|gb|FL097345.1|FL097345
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACAGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|76292653|gb|DV032221.1|DV032221
EST:     AACCAACTTATGCTCGAGTCAATTTTCG-AGCTCAAACGGAAG                         GAGAAGTCGCTGCAAGAAGGAGAACAAGGT
genomic: AACCAACTTATGCTCGAGTCAATTT-CGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGA-GGAGAACAAGGT
EST: gi|76011021|gb|DT938191.1|DT938191
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|22935963|gb|BU572238.1|BU572238
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACAGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|149079784|gb|EE168783.2|EE168783
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|76927299|gb|DV171231.1|DV171231
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|76927298|gb|DV171230.1|DV171230
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|211128458|gb|FL066355.1|FL066355
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACAGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|86470069|gb|DY236439.1|DY236439
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|50329666|gb|CO524792.1|CO524792
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|78088356|gb|DV516749.1|DV516749
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCTACGNAAG                         GAGAAGTCGCTGCAGG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGG
EST: gi|76280608|gb|DV020176.1|DV020176
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAGGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|74232112|gb|DT640026.1|DT640026
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|74242353|gb|DT650267.1|DT650267
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|76291867|gb|DV031435.1|DV031435
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|9952819|gb|BE639402.1|BE639402
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACAGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|149008922|gb|EE041142.2|EE041142
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|149001051|gb|EE038302.2|EE038302
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|74238830|gb|DT646744.1|DT646744
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|71314645|gb|DR793944.1|DR793944
EST:     GTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: GTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|149083438|gb|EE172758.2|EE172758
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCA
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCA
EST: gi|86467441|gb|DY233811.1|DY233811
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|71302369|gb|DR787302.1|DR787302
EST:     AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
EST: gi|76913832|gb|DV165272.1|DV165272
EST:     ACCCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG                         GAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG
genomic: AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgt ... attgccgcagGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGgtaaattcgtcgagcttgcttaaagttggccgttggaacttcctttttaagaaatgtaaggtttctttagctgggcattaggtgggcatggtttgttgcaagtattgactgctctggttgcctagttacatccacaaaatattcctgctcttgtgctgtgctgagtattggcatgcgatgcattgccgcag

- - - - - - - - - - - - - GGAGCT