Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATTGTCGGAAAGGCCTGTGCTAATGAAACCTGGCATCAATTGCCTGAACTGCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAATgtgcggtttgttaactagagattctttttctttggcatccgactcaggagttccaacgcactacttgtttcgttaacatcacacttgctttttccttgcttcattaacag

Basic information

species Zea mays
transcript GRMZM5G823750_T04
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5791479|gb|AI978271.1|AI978271
EST:     AGAGCTAGCTAAAAT                         AATACTCAATAAGCATAGTGATGACATATACCTGATTGAAGTTGTGAGAAG
genomic: AGAGCTAGCTAAAATgtgcggtttg ... tcattaacagAATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAAG
EST: gi|60395120|gb|DN227989.1|DN227989
EST:     CTGCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAAT                         AATACTCAATAAGCATAGTGATGACATATACCTGATTGAAGTTGTGAGAAG
genomic: CTGCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAATgtgcggtttg ... tcattaacagAATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAAG
EST: gi|29576943|gb|CB617055.1|CB617055
EST:     CTGCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAAT                         AATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAAG
genomic: CTGCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAATgtgcggtttg ... tcattaacagAATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAAG
EST: gi|6022643|gb|AW067455.1|AW067455
EST:     CTGCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAAT                         AATACTCAATAAGCATAGTGATGACATATACCTGATTGAAGTTGTGAGAAG
genomic: CTGCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAATgtgcggtttg ... tcattaacagAATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAAG
EST: gi|28361743|gb|CB240099.1|CB240099
EST:     CTGCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAAT                         AATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAA
genomic: CTGCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAATgtgcggtttg ... tcattaacagAATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAA
EST: gi|78116157|gb|DV534545.1|DV534545
EST:     GCTTTTAGACAGGAAAGAAGGACGCATGAAGACAGAGCTAGCTAAAAT                         AATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAAG
genomic: GCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAATgtgcggtttg ... tcattaacagAATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAAG
EST: gi|6056596|gb|AW091001.1|AW091001
EST:     CTGCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAAT                         AATACTCAATAAGCATAGTGATGACATATACCTGATTGAAGTTGTGAGAAG
genomic: CTGCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAATgtgcggtttg ... tcattaacagAATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAAG
EST: gi|60351828|gb|DN218801.1|DN218801
EST:     CTGCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAAT                         AATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAAG
genomic: CTGCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAATgtgcggtttg ... tcattaacagAATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAAG
EST: gi|6194514|gb|AW146618.1|AW146618
EST:     TTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAAT                         AATACTCAATAAGCATAGTGATGACATATACCTGATTGAAGTTGTGAGAAG
genomic: TTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAATgtgcggtttg ... tcattaacagAATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAAG
EST: gi|29544924|gb|CB605532.1|CB605532
EST:     CTGCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAAT                         AATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAAG
genomic: CTGCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAATgtgcggtttg ... tcattaacagAATACTCAATAAGCATAGTGATGACATATACCTGGTTGAAGTTGTGAGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTATTGTCGGAAAGGCCTGTGCTAATGAAACCTGGCATCAATTGCCTGAACTGCTTTTAGACAGGGAAGAAGGACGCATGAAGACAGAGCTAGCTAAAATgtgcggtttgttaactagagattctttttctttggcatccgactcaggagttccaacgcactacttgtttcgttaacatcacacttgctttttccttgcttcattaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT