1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGCAAGTGCTACTGGAAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAGgtttgttgaattataggtgaaatatttcttgtatcaatctgctccttgtttttaatacacaacatgtatttatataatcccaaataactgaaaagttatc...
species | Zea mays |
transcript | GRMZM2G115939_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAG ATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATGEST: gi|211373002|gb|FL342998.1|FL342998
genomic: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAGgtttgttgaa ... aatgttccagATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATG
EST: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAG ATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATGEST: gi|32801453|gb|CD953689.1|CD953689
genomic: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAGgtttgttgaa ... aatgttccagATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATG
EST: TAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAG ATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATGEST: gi|9028438|gb|BE238583.1|BE238583
genomic: TAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAGgtttgttgaa ... aatgttccagATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATG
EST: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAG ATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATGEST: gi|211398788|gb|FL318386.1|FL318386
genomic: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAGgtttgttgaa ... aatgttccagATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATG
EST: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAG ATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATGEST: gi|32915063|gb|CF019875.1|CF019875
genomic: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAGgtttgttgaa ... aatgttccagATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATG
EST: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAG ATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATGEST: gi|211259767|gb|FL311710.1|FL311710
genomic: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAGgtttgttgaa ... aatgttccagATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATG
EST: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAG ATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATGEST: gi|211291785|gb|FL131028.1|FL131028
genomic: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAGgtttgttgaa ... aatgttccagATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATG
EST: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAG ATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATGEST: gi|78077789|gb|DV506218.1|DV506218
genomic: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAGgtttgttgaa ... aatgttccagATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATG
EST: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAG ATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATGEST: gi|24462527|gb|BM660058.1|BM660058
genomic: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAGgtttgttgaa ... aatgttccagATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATG
EST: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAG ATATTAGTGAGCTCAACCTGCCGAAGACNACATCAATTTCTTTTCCCAATGEST: gi|211350032|gb|FL354315.1|FL354315
genomic: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAGgtttgttgaa ... aatgttccagATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATG
EST: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAG ATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATGEST: gi|211320075|gb|FL327296.1|FL327296
genomic: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAGgtttgttgaa ... aatgttccagATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATG
EST: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAG ATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATGEST: gi|211153912|gb|FL325451.1|FL325451
genomic: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAGgtttgttgaa ... aatgttccagATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATG
EST: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAG ATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATGEST: gi|50326390|gb|CO521516.1|CO521516
genomic: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAGgtttgttgaa ... aatgttccagATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATG
EST: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAG ATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATGEST: gi|211407585|gb|FL360124.1|FL360124
genomic: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAGgtttgttgaa ... aatgttccagATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATG
EST: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAG ATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATGEST: gi|211291786|gb|FL131029.1|FL131029
genomic: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAGgtttgttgaa ... aatgttccagATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATG
EST: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAG ATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATGEST: gi|91875000|gb|EB404957.1|EB404957
genomic: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAGgtttgttgaa ... aatgttccagATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATG
EST: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAG ATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATGEST: gi|211291784|gb|FL131027.1|FL131027
genomic: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAGgtttgttgaa ... aatgttccagATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATG
EST: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAG ATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATGEST: gi|19770077|gb|BQ034798.1|BQ034798
genomic: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAGgtttgttgaa ... aatgttccagATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATG
EST: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAG ATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATGEST: gi|211472923|gb|FL342170.1|FL342170
genomic: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAGgtttgttgaa ... aatgttccagATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATG
EST: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAG ATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATGEST: gi|211118985|gb|FL350356.1|FL350356
genomic: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAGgtttgttgaa ... aatgttccagATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATG
EST: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAG ATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATGEST: gi|71442439|gb|DR823489.1|DR823489
genomic: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAGgtttgttgaa ... aatgttccagATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATG
EST: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAG ATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATGEST: gi|211090799|gb|FL312054.1|FL312054
genomic: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAGgtttgttgaa ... aatgttccagATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATG
EST: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAG ATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATG
genomic: AAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAGgtttgttgaa ... aatgttccagATATTAGTGAGCTCAACCTGCCGAAGACCACATCAATTTCTTTTCCCAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTTCAAAATAAAGGGTCAAAAGAAAGATGAGGCAGCAAGTGCTACTGGAAAGGCCCCTGTTAAGAAACAGTCTGCTGGGGAGCTCCGTCTTCATAAAGgtttgttgaattataggtgaaatatttcttgtatcaatctgctccttgtttttaatacacaacatgtatttatataatcccaaataactgaaaagttatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaataac