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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGCGCCGCTCACGGAGCAGCAGAAGGCCGCGATCGCCGCGCTCTCCCACGCCGTGGCGGAGCGGCCATTCCCGCCCAACCTGgtgaggcgcagcacctgagaactgtcatatttgtatgaattggttacttgaaccaaccaatgaatgttgggatttcgtagggctgtaattgggctcacct...

Basic information

species Zea mays
transcript GRMZM5G825854_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G825854_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g34970.1 (Oryza sativa), 5'ss of exon 2
AGCGCGCCGCTCACGGAGCAGCAGAAGGCCGCGATCGCCGCGCTCTCCCACGCCGTGGCGGAGCGGCCATTCCCGCCCAACCTGgtgaggcgcagcacctgagaactgtc----atatttgtatgaattggt--tacttgaaccaaccaatgaatgttgggatttcgtagggctgtaattgggctcacct
| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||| | |||||||| |||||| |||||||||||||||||  || ||  | | |||     ||  ||  ||  || ||   |  |     | |  | | ||||||| ||| |  |    |  |  || ||       
AACGCGCCGCTCACGGAGCAGCAGAATGCCGCGATCGCCGCGCTCTCCCGCGCCGTGTCCGAGCGGCCGTTCCCGGCCAACCTGgtgaggcgccacatctcgggattgtgtgcgatggtttgatccataggccctgttgcttgcgatgactaaatgttgtgatctgatgctaccatggtttggt------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211087679|gb|FL052576.1|FL052576
EST:     TCGCCGCGCTCTCCCACGCCGTGGCGGAGCGGCCATTCCCGCCCAACCTG                         GAAAAAAGTTCAGGGAAGGATGAAGGCTTGGCTGTTCCCGAGAAAGAATCT
genomic: TCGCCGCGCTCTCCCACGCCGTGGCGGAGCGGCCATTCCCGCCCAACCTGgtgaggcgca ... tgtttgtcagGAAAAAAGTTCAGGGAAGGATGAAGGCTTGGCTGTTCCCGAGAAAGAATCT
EST: gi|93281267|gb|EB673531.1|EB673531
EST:     TCGCCGCGCTCTCCCACGCCGTGGCGGAGCGGCCATTCCCGCCCAACCTG                         GAAAAAAGTTCAGGGAAGGATGAAGGCTTGGCTGTTCCCGAGAAAGAATCT
genomic: TCGCCGCGCTCTCCCACGCCGTGGCGGAGCGGCCATTCCCGCCCAACCTGgtgaggcgca ... tgtttgtcagGAAAAAAGTTCAGGGAAGGATGAAGGCTTGGCTGTTCCCGAGAAAGAATCT
EST: gi|211087678|gb|FL052575.1|FL052575
EST:     TCGCCGCGCTCTCCCACGCCGTGGCGGAGCGGCCATTCCCGCCCAACCTG                         GAAAAAAGTTCAGGGAAGGATGAAGGCTTGGCTGTTCCCGAGAAAGAATCT
genomic: TCGCCGCGCTCTCCCACGCCGTGGCGGAGCGGCCATTCCCGCCCAACCTGgtgaggcgca ... tgtttgtcagGAAAAAAGTTCAGGGAAGGATGAAGGCTTGGCTGTTCCCGAGAAAGAATCT
EST: gi|149104241|gb|EE289677.2|EE289677
EST:     TCGCCGCGCTCTCCCACGCCGTGGCGGAGCGGCCATTCCCGCCCAACCTG                         GAAAAAAGTTCAGGGAAGGATGAAGGCTTGGCTGTTCCCGAGAAAGAATCT
genomic: TCGCCGCGCTCTCCCACGCCGTGGCGGAGCGGCCATTCCCGCCCAACCTGgtgaggcgca ... tgtttgtcagGAAAAAAGTTCAGGGAAGGATGAAGGCTTGGCTGTTCCCGAGAAAGAATCT
EST: gi|211087686|gb|FL052583.1|FL052583
EST:     TCGCCGCGCTCTCCCACGCCGTGGCGGAGCGGCCATTCCCGCCCAACCTG                         GAAAAAAGTTCAGGGAAGGATGAAGGCTTGGCTGTTCCCGAGAAAGAATCT
genomic: TCGCCGCGCTCTCCCACGCCGTGGCGGAGCGGCCATTCCCGCCCAACCTGgtgaggcgca ... tgtttgtcagGAAAAAAGTTCAGGGAAGGATGAAGGCTTGGCTGTTCCCGAGAAAGAATCT
EST: gi|148952057|gb|EC897846.2|EC897846
EST:     TCGCCGCGCTCTCCCACGCCGTGGCGGAGCGGCCATTCCCGCCCAACCTG                         GAAAAAAGTTCAGGGAAGGATGAAGGCTTGGCTGTTCCCGAGAAAGAATCT
genomic: TCGCCGCGCTCTCCCACGCCGTGGCGGAGCGGCCATTCCCGCCCAACCTGgtgaggcgca ... tgtttgtcagGAAAAAAGTTCAGGGAAGGATGAAGGCTTGGCTGTTCCCGAGAAAGAATCT
EST: gi|91872014|gb|EB401971.1|EB401971
EST:     TCGCCGCGCTCTCCCACGCCGTGGCGGAGCGGCCATTCCCGCCCAACCTG                         GAAAAAAGTTCAGGGAAGGATGAAGGCTTGGCTGTTCCCGAGAAAGAATCT
genomic: TCGCCGCGCTCTCCCACGCCGTGGCGGAGCGGCCATTCCCGCCCAACCTGgtgaggcgca ... tgtttgtcagGAAAAAAGTTCAGGGAAGGATGAAGGCTTGGCTGTTCCCGAGAAAGAATCT
EST: gi|211087683|gb|FL052580.1|FL052580
EST:     TCGCCGCGCTCTCCCACGCCGTGGCGGAGCGGCCATTCCCGCCCCACCTG                         GGAAAACAGTTCACGGAA
genomic: TCGCCGCGCTCTCCCACGCCGTGGCGGAGCGGCCATTCCCGCCCAACCTGgtgaggcgca ... tgtttgtcagGAAAAA-AGTTCAGGGAA
EST: gi|211087681|gb|FL052578.1|FL052578
EST:     TCGCCGCGCTCTCCCACGCCGTGGCGGAGCGGCCATTCCCGCCCAACCTG                         GAAAAAAGTTCAGGGAAGGATGAAGGCGTGGCTGTTCCCGAGAAAGAATCT
genomic: TCGCCGCGCTCTCCCACGCCGTGGCGGAGCGGCCATTCCCGCCCAACCTGgtgaggcgca ... tgtttgtcagGAAAAAAGTTCAGGGAAGGATGAAGGCTTGGCTGTTCCCGAGAAAGAATCT