Sequence
atgc intronic sequence ATGC exonic sequenceCGGTGAATCAGTAGCCGGTCTCCGTCCAATATTGCAAAGGATACTTGCAGATGTTCATGAGCGGCTAGCATTTTGTGCTCGGACTCATATCCGTGAAGAGgtagtgttctgtgtgtccatatgttgactaatgattctgtctttttgttagtatactttttatggggctgctatatattatgagaattgttccttaatat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G825854_T01 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os08g34970.1 (Oryza sativa), 5'ss of exon 15
CGGTGAATCAGTAGCCGGTCTCCGTCCAATATTGCAAAGGATACTTGCAGATGTTCATGAGCGGCTAGCATTTTGTGCTCGGACTCATATCCGTGAAGAGgtagtgttctgtgtgt-ccatatgttgactaatgattctgtctttttgttagtatactttttatggggctgctatatattatgagaattgttccttaatat-
|| ||||||||||| || || || || ||||||||||||||||||||||| |||||||||||| | || |||||||||||||||||||| ||||| |||||| | || | | || | ||| | | | ||| ||||| | ||| | | || | | || | | | |||| || |
AGGAGAATCAGTAGCTGGGCTTCGACCCATATTGCAAAGGATACTTGCAGACGTTCATGAGCGGTTGGCCTTTTGTGCTCGGACTCATATTCGTGAGGAGgtactatttaaaatatgccccttattggtgact--tcatgtttttttttcagtcagcatgttctcgtttgagtacgtggtgcatatttcgttcatttgttcg
upper sequence: GRMZM5G825854_T01 (Zea mays), 5'ss of exon 15
lower sequence: GLYMA17G04990.1 (Glycine max), 5'ss of exon 15
CGGTGAATCAGTAGCCGGTCTCCGTCCAATATTGCAAAGGATACTTGCAGATGTTCATGAGCGGCTAGCATTTTGTGCTCGGACTCATATCCGTGAAGAGgtagtgttct-----gtgtgtccatatgttgactaatg----attctgtctt-----tttgtt--agtatacttt-ttatgg-ggctgctatatattatgagaattgttccttaatat---------------------------------------
|||||||| |||| ||||| ||||| | ||| | || || | |||||||||||||||||| | ||||| |||||||||||||||| || || ||||||| | || || | | || | | | || | ||||| ||| |||||| | | || || || ||| | | |||| | | | || || ||||||
GAGTGAATCACTAGCTGGTCTTCGTCCTACATTTGAGAGAATTTTAGCAGATGTTCATGAGCGGTTGACATTTCGTGCTCGGACTCATATACGGGATGAGgtaggttacttattggtttttttattttattattattttcatgttctgacttagttatttgttttaatttagttccttgtggtgatcgttataataatttaaatttcttttctaatatcttggtttcttgaaaccttatttctttatcttattacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32931070|gb|CF035882.1|CF035882EST: ATGTTCATGAGCGGCTAGCATTTTGTGCTCGGACTCATATCCGTGAAGAG ATTGCAAATTTCCGTCCTTCTGTCGAAGATCTAGATTATCCTGGGAAACTT
genomic: ATGTTCATGAGCGGCTAGCATTTTGTGCTCGGACTCATATCCGTGAAGAGgtagtgttct ... tttttgccagATTGCAAATTTCCGTCCTTCTGTCGAAGATCTAGATTATCCTGGGAAACTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGGTGAATCAGTAGCCGGTCTCCGTCCAATATTGCAAAGGATACTTGCAGATGTTCATGAGCGGCTAGCATTTTGTGCTCGGACTCATATCCGTGAAGAGgtagtgttctgtgtgtccatatgttgactaatgattctgtctttttgttagtatactttttatggggctgctatatattatgagaattgttccttaatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA