1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGAGAGCCGGCAAAGCAGCAGACGTTTTCTACTGCCTCAAGCTCCTGGAGGCAACGGGGATTTCCACTGTTCCGGGATCTGGTTTTGGGCAGAAGGAAGGgtatgtgtatatatgatgatgataatgagttatctgtgagtgctggatgaagttttgaagtgatgggtttatttatgaatgaacacag
species | Zea mays |
transcript | GRMZM5G840582_T03 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GCAACGGGGATTTCCACTGTTCCGGGATCTGGTTTTGGGCAGAAGGAAGG GGTGTTCCCCCTTCGGACAACTATCCTTCCAGCCGAGGAAGACTTCCCTACEST: gi|32803697|gb|CD955933.1|CD955933
genomic: GCAACGGGGATTTCCACTGTTCCGGGATCTGGTTTTGGGCAGAAGGAAGGgtatgtgtat ... atgaacacagGGTGTTCCACCTTCGGACAACTATCCTTCCAGCCGAGGAAGACTTCCCTAC
EST: GATCCGGTTTTGGGCAGAAGGAAGG GGTGTTCCACCTTCGGACAACTATCCTTCCAGCCGAGGAAGACTTCCCTACEST: gi|32793206|gb|CD945442.1|CD945442
genomic: GATCTGGTTTTGGGCAGAAGGAAGGgtatgtgtat ... atgaacacagGGTGTTCCACCTTCGGACAACTATCCTTCCAGCCGAGGAAGACTTCCCTAC
EST: GATCTGGTTTTGGGCAGAAGGAAGG GGTGTTCCACCTTCGGACAACTATCCTTCCAGCCGAGGAAGACTTCCCTACEST: gi|5740535|gb|AI948225.1|AI948225
genomic: GATCTGGTTTTGGGCAGAAGGAAGGgtatgtgtat ... atgaacacagGGTGTTCCACCTTCGGACAACTATCCTTCCAGCCGAGGAAGACTTCCCTAC
EST: GCAACGGGGATTTCCACTGTTCCGGGATCTGGTTTTGGGCAGAAGGAAGG GGTGTTCCACCTTCGGACAACTATCCTTCCAGCCGAGGAAGACTTCCCTACEST: gi|32850940|gb|CD990621.1|CD990621
genomic: GCAACGGGGATTTCCACTGTTCCGGGATCTGGTTTTGGGCAGAAGGAAGGgtatgtgtat ... atgaacacagGGTGTTCCACCTTCGGACAACTATCCTTCCAGCCGAGGAAGACTTCCCTAC
EST: GCAACGGGGATTTCCACTGTTCCGGGATCTGGTTTTGGGCAGAAGGAAGG GGTGTTCCACCTTCGGACAACTATCCTTCCAGCCGAGGAAGACTTCCCTACEST: gi|7238269|gb|AW573536.1|AW573536
genomic: GCAACGGGGATTTCCACTGTTCCGGGATCTGGTTTTGGGCAGAAGGAAGGgtatgtgtat ... atgaacacagGGTGTTCCACCTTCGGACAACTATCCTTCCAGCCGAGGAAGACTTCCCTAC
EST: GCAACGGGGATTTCCACTGTTCCGGGATCTGGTTTTGGGCAGAAGGAAGG GGTGTTCCACCTTCGGACAACTATCCTTCCAGCCGAGGAAGACTTCCCTACEST: gi|110203147|gb|EC885044.1|EC885044
genomic: GCAACGGGGATTTCCACTGTTCCGGGATCTGGTTTTGGGCAGAAGGAAGGgtatgtgtat ... atgaacacagGGTGTTCCACCTTCGGACAACTATCCTTCCAGCCGAGGAAGACTTCCCTAC
EST: GCAACGGGGATTTCCACTGTTCCGGGATCTGGTTTTGGGCAGAAGGAAGG GGTGTTCCACCTTCGGACAACTATCCTTCCAGCCGAGGAAGACTTCCCTACEST: gi|91054117|gb|EB164535.1|EB164535
genomic: GCAACGGGGATTTCCACTGTTCCGGGATCTGGTTTTGGGCAGAAGGAAGGgtatgtgtat ... atgaacacagGGTGTTCCACCTTCGGACAACTATCCTTCCAGCCGAGGAAGACTTCCCTAC
EST: GCAACGGGGATTTCCACTGTTCCGGGATCTGGTTTTGGGCAGAAGGAAGG GGTGTTCCACCTTCGGACAACTATCCTTCCAGCCGAGGAAGACTTCCCTACEST: gi|5917498|gb|AW054301.1|AW054301
genomic: GCAACGGGGATTTCCACTGTTCCGGGATCTGGTTTTGGGCAGAAGGAAGGgtatgtgtat ... atgaacacagGGTGTTCCACCTTCGGACAACTATCCTTCCAGCCGAGGAAGACTTCCCTAC
EST: GCAACGGGGATTTCCACTGTTCCGGGATCTGGTTTTGGGCAGAAGGAAGG GGTGTTCCACCTTCGGACAACTATCCTTCCAGCCGAGGAAGACTTCCCTACEST: gi|5928965|gb|AW056257.1|AW056257
genomic: GCAACGGGGATTTCCACTGTTCCGGGATCTGGTTTTGGGCAGAAGGAAGGgtatgtgtat ... atgaacacagGGTGTTCCACCTTCGGACAACTATCCTTCCAGCCGAGGAAGACTTCCCTAC
EST: GCAACGGGGATTTCCACTGTTCCGGGATCTGGTTTTGGGCAGAAGGAAGG GGTGTTCCACCTTCGGACAACTATCCTTCCAGCCGAGGAAGACTTCCCTACEST: gi|7227753|gb|AW566394.1|AW566394
genomic: GCAACGGGGATTTCCACTGTTCCGGGATCTGGTTTTGGGCAGAAGGAAGGgtatgtgtat ... atgaacacagGGTGTTCCACCTTCGGACAACTATCCTTCCAGCCGAGGAAGACTTCCCTAC
EST: GCAACGGGGATTTCCACTGTTCCGGGATCTGGTTTTGGGCAGAAGGAAGG GGTGTTCCACCTTCGGACAACTATCCTTCCAGCCGAGGAAGACTTCCCTAC
genomic: GCAACGGGGATTTCCACTGTTCCGGGATCTGGTTTTGGGCAGAAGGAAGGgtatgtgtat ... atgaacacagGGTGTTCCACCTTCGGACAACTATCCTTCCAGCCGAGGAAGACTTCCCTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGAGCCGGCAAAGCAGCAGACGTTTTCTACTGCCTCAAGCTCCTGGAGGCAACGGGGATTTCCACTGTTCCGGGATCTGGTTTTGGGCAGAAGGAAGGgtatgtgtatatatgatgatgataatgagttatctgtgagtgctggatgaagttttgaagtgatgggtttatttatgaatgaacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA