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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGTGCTTCATCCCAGgtaacttgcagttgtgtttccttagtacaagtgaagtcaatagacagctaaggatgatacttatacttcgtggaaccttgcag

Basic information

species Zea mays
transcript GRMZM5G825854_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G825854_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os08g34970.1 (Oryza sativa), 5'ss of exon 10
TCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGTGCTTCATCCCAGgtaacttgcagttgtgtttccttag-tacaagtgaagtcaatagacagctaaggatgatacttatacttcgtggaaccttgcag
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TCTCGTGCATTAGGTATGATTCGGTCACATGTCCTGTCAATACTTAAAGCCGCTTCATCCCAGgtgattttcagttgaactttggtaggtaaatgcgatatgactactaaataccagataatagcttgattttatttcag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22489923|gb|BU049846.1|BU049846
EST:     GTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGTTCTTCATCCCAG                         GTTCAAGCTGCAATTCGAAGCAGCGATTCTGGCAAAAACATTGTCACAGAG
genomic: GTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGTGCTTCATCCCAGgtaacttgca ... aaccttgcagGTTCAAGCTGCAATTCGAAGCAGCGATTCTGGCAAAAACATTGTCACAGAG
EST: gi|211066409|gb|FL073783.1|FL073783
EST:     GTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGTGCTTCATCCCAG                         GTTCAAGCTGCAATTCGAAGCAGCGATTCTGGCAAAAACATTGTCACAGAG
genomic: GTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGTGCTTCATCCCAGgtaacttgca ... aaccttgcagGTTCAAGCTGCAATTCGAAGCAGCGATTCTGGCAAAAACATTGTCACAGAG
EST: gi|18450702|gb|BM428980.1|BM428980
EST:     GTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGTGCTTCATCCCAG                         GTTCAAGCTGCAATTCGAAGCAGCGATTCTGGCAAAAACATTGTCACAGAG
genomic: GTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGTGCTTCATCCCAGgtaacttgca ... aaccttgcagGTTCAAGCTGCAATTCGAAGCAGCGATTCTGGCAAAAACATTGTCACAGAG
EST: gi|87153442|gb|DY398231.1|DY398231
EST:     GTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGTGCTTCATCCCAG                         GTTCAAGCTGCAATTCGAAGCAGCGATTCTGGCAAAAACATTGTCACAGAG
genomic: GTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGTGCTTCATCCCAGgtaacttgca ... aaccttgcagGTTCAAGCTGCAATTCGAAGCAGCGATTCTGGCAAAAACATTGTCACAGAG
EST: gi|32859413|gb|CD999094.1|CD999094
EST:     GTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGTGCTTCATCCCAG                         GTTCAAGCTGCAATTCGAAGCAGCGATTCTGGCAAAAACATTGTCACAGAG
genomic: GTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGTGCTTCATCCCAGgtaacttgca ... aaccttgcagGTTCAAGCTGCAATTCGAAGCAGCGATTCTGGCAAAAACATTGTCACAGAG