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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAATCACCTGGATTTTCTGGGAGTGCAGGTGGCATGGGTTACTGGACCGTGGTTTCTTTCCATTTTTATGAATATGCTTCCATGGGAAAGTGgtcagtctccatcatggcttatatagaaattagatgttatttggggcctacattgcatttaaaatctatttatatttctttgatttatggccatctcactaatcttagcattctcattgtcatgattgcattcataatgtcttggttacaagcttatgggttttgatggctttctcctgacttcag

Basic information

species Vitis vinifera
transcript Vv13s0067g03420.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g03420.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os01g61860.1 (Oryza sativa), 5'ss of exon 9
TTAATCACCTGGATTTTCTGGGAGTGCAGGTGGCATGGGTTACTGGACCGTGGTTTCTTTCCATTTTTATGAATATGCTTCCATGGGAAAGTGgtcagtctccatcatggcttatatagaaattagatgttatttggggcctaca-ttgcatttaaaatctatttatatttctttgatttatggc-catctcactaatcttagcattctcattgtcatgattgcattcataatgtcttggttacaagcttatgggttttgatggctttctcctgacttcag
| |||||||||||||  || || || || || ||||||||||||||||| |||||||| || || || ||||| ||||| ||||||||||||||| |||||  ||  |   |||| |  ||     || |      ||   ||   | | | |   |    |       |  ||||  || |||   |  || |                                                                                       
TAAATCACCTGGATTACCTCGGCGTTCAAGTTGCATGGGTTACTGGACCATGGTTTCTATCTATATTCATGAACATGCTACCATGGGAAAGTGgtaagtctt-atttttctttatttgaaagagtaatttcggaaaggttttatggtcgaagtcgtagaaaaccatgggtattttggcttgtggtatacatccc---------------------------------------------------------------------------------------

upper sequence: Vv13s0067g03420.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os05g38950.2 (Oryza sativa), 5'ss of exon 9
TTAATCACCTGGATTTTCTGGGAGTGCAGGTGGCATGGGTTACTGGACCGTGGTTTCTTTCCATTTTTATGAATATGCTTCCATGGGAAAGTGgtcag-tctccatcatggcttatatagaaattagatgttatttggggcctacattgcatttaaaatctatttatatttctttgatttatggccatctcactaatcttagcattctcattgtcatgattgcattcataatgtcttggttacaagcttatgggttttgatggctttctcctgacttcag
  |||||||||||||  || ||  | || || ||||||||||||||||| ||||| || |||||||| |  ||| ||||||| ||||| |||||| || | |  | | | | |  | |   |  |   ||||  |||  |   ||      |||||  | ||  | ||  |     |||  |||  || | || |                                                                                     
CAAATCACCTGGATTACCTTGGTCTTCAAGTTGCATGGGTTACTGGACCATGGTTCCTATCCATTTTCACCAATGTGCTTCCTTGGGAGAGTGgttagatttttacctttgttgttctttca--tgtttgtttcttgtaggaaaccccatttttaatttatacct-tagctaagccattggtggagatataacaac------------------------------------------------------------------------------------

upper sequence: Vv13s0067g03420.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G096470_T01 (Zea mays), 5'ss of exon 9
TTAATCACCTGGATTTTCTGGGAGTGCAGGTGGCATGGGTTACTGGACCGTGGTTTCTTTCCATTTTTATGAATATGCTTCCATGGGAAAGTGgtcagtctccatcatggcttatatagaaattagatgttatttggggcctacattgcatttaaaatctatttatatttctttgatttatggccatctcactaatcttagcattctcattgtcatgattgcattcataatgtcttggttacaagcttatgggttttgatggctttctcctgacttcag
| ||||| || ||||  || || || || || |||||||| ||||| || ||||| || || ||||||||||| |||||||| |||||||||||| || ||  ||  ||  |||| |  ||  |  |  || ||        | ||    |||    |||  ||   ||  ||||  ||||        || | | |||                                                                                
TAAATCATCTTGATTACCTTGGTGTACAAGTTGCATGGGTCACTGGTCCATGGTTCCTATCTATTTTTATGAACATGCTTCCCTGGGAAAGTGgtgagcctt-attctgtattatttgaaacatctacatt-ttcctttttgaaatgatgtttc---tctgcttgccttattttgtgttat--ttgaaacatttaccttt-------------------------------------------------------------------------------

upper sequence: Vv13s0067g03420.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G051050_T01 (Zea mays), 5'ss of exon 9
TTAATCACCTGGATTTTCTGGGAGTGCAGGTGGCATGGGTTACTGGACCGTGGTTTCTTTCCATTTTTATGAATATGCTTCCATGGGAAAGTGgtcagtctccatcatggcttat-atagaaattagatgttatttggggcctacattgcatttaaaatctatttatatttctttgatttatggccatct-cactaatcttagcattctcattgtcatgattgcattcataatgtcttggttacaagcttatgggttttgatggctttctcctgacttcag
  |||||||||||||  || ||| | || || |||||||||||||| || |||||  | ||||| || | |||| ||||||| |||||||||||| || ||  ||  |     || ||    ||||     || |||  ||  |   | |  |  |||| || ||    |  |  |||    ||  | || |||                                                                                       
CAAATCACCTGGATTACCTTGGACTTCAAGTTGCATGGGTTACTGGGCCATGGTTCTTATCCATCTTCACGAATGTGCTTCCTTGGGAAAGTGgttagactttatttttttacattatttccattaccgagtacttgtagcagaacattctctataaatatagtttagctaatgcgat--ggggttacctgcacc--------------------------------------------------------------------------------------

upper sequence: Vv13s0067g03420.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA20G38810.1 (Glycine max), 5'ss of exon 9
TTAATCACCTGGATTTTCTGGGAGTGCAGGTGGCATGGGTTACTGGACCGTGGTTTCTTTCCATTTTTATGAATATGCTTCCATGGGAAAGTGgtcagtctccatcatggcttatatagaaattagatgttatttggggcctacattgcatttaaaatctatttatatttctttgatttatggccatctcactaatcttagcattctcattgtcatgattgcattcataatgtcttggttacaagcttatgggttttgatggctttctcctgacttcag
  ||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| || ||||||||| |||| |||||||| |||||||||||||||  |   | |||   ||| ||   | |||  ||   || |       ||||| |   |||  |    || |    |     | ||       ||||| | || |   |  | |       |||| | | ||   | |||                                           
CCAATCATCTGGATTATCTGGGAGTGCAGGTGGCATGGGTTACTGGACCATGGTTCCTGTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTGgtcaggtt---ttatgttctatctattgagtag-cgtagcttag------tattgcttcacaaagttgccaatgtcaaatgagcatttg-----tacactattgttcgagcttccttctgatctattgtaattatttggacttcag----------------------------------------

upper sequence: Vv13s0067g03420.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA10G44110.1 (Glycine max), 5'ss of exon 9
TTAATCACCTGGATTTTCTGGGAGTGCAGGTGGCATGGGTTACTGGACCGTGGTTTCTTTCCATTTTTATGAATATGCTTCCATGGGAAAGTGgtcagtctccatcatggcttatatagaaattagatgttatttggggcctacattgcatttaaaatctatttatatttctttgatttatggccatctcactaatcttagcattctcattgtcatgattgcattcataatgtcttggttacaagcttatgggttttgatggctttctcctgacttcag
  ||||| || |||| ||||||||||||||||||||||||||||||||| ||||| || ||||||||| |||| |||||||| |||||||||||||||  |   | |||   ||| ||   | ||| |||    | |  | ||| |  ||     ||  |    || |    |     | ||   |    | |  | | ||| | ||  |  ||   |||| | | ||   | |||                                           
CCAATCATCTAGATTATCTGGGAGTGCAGGTGGCATGGGTTACTGGACCATGGTTCCTGTCCATTTTTGTGAACATGCTTCCTTGGGAAAGTGgtcaggtt---ttatgttctatctatttagtag-tgtagcctagt-cttacttcaca-----aagttgccaatgtgaaatgagcatttg--tacgctattg-tttgagcttccttctgatcc--attgtaattatttggacttcag----------------------------------------

upper sequence: Vv13s0067g03420.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT3G55020.1 (Arabidopsis thaliana), 5'ss of exon 9
TTAATCACCTGGATTTTCTGGGAGTGCAGGTGGCATGGGTTACTGGACCGTGGTTTCTTTCCATTTTTATGAATATGCTTCCATGGGAAAGTGgtcag-tctccatcatggcttatatagaaattagatgttatttggggcctacattgcatttaaaatctatttatatttctttgatttatggccatctcactaatcttagcattctcattgtca--tgattgcattcataatgtcttggttacaagcttatgggttttgatggctttctcctgacttcag
|| |||| ||||||| ||| |||||||| ||||| |||||||| || || |||||||||||||| || |||||||||||||||||||||||||||||| | |  | ||| |    || ||   |    | | |  | |     |  |  |   |||| | |  |   | |   || |  | ||  |||||  ||  | | ||  ||   | ||  |    |||   ||  |||    | |  | |  | | |  |                           
TTCATCATCTGGATTATCTTGGAGTGCAAGTGGCTTGGGTTACAGGGCCATGGTTTCTTTCCATCTTCATGAATATGCTTCCATGGGAAAGTGgtcaggttttaaacattggaattaaagctgtcttgtttgaaatagaattga-gtaactagtaaattatgctggcaatctgttaaaatttgatcatctttctc-tttgagatttgggactgagaacccattttctttctaaatgttcgtcttcttgatcacag---------------------------

upper sequence: Vv13s0067g03420.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT2G39280.1 (Arabidopsis thaliana), 5'ss of exon 9
TTAATCACCTGGATTTTCTGGGAGTGCAGGTGGCATGGGTTACTGGACCGTGGTTTCTTTCCATTTTTATGAATATGCTTCCATGGGAAAGTGgtcagtctccatcatggcttatatagaaattagatgttatttggggcctacattgcatttaaaatctatttatatttctttgatttatggccatctcactaatcttagcattctcattgtcatgattgcattcataatgtcttggttacaagcttatgggttttgatggctttctcctgacttcag
|| |||| || |||| ||| |||||||||||||| || ||||| || || ||||||||| |||| || || |||||||||||||||||||||||||||  |               |||||||| ||    ||||    | |   ||  |    |||  | |||||||    ||   || |    || ||| |      |  ||  || |||  || |  |                                                          
TTCATCATCTAGATTATCTTGGAGTGCAGGTGGCTTGCGTTACAGGGCCATGGTTTCTTACCATCTTCATTAATATGCTTCCATGGGAAAGTGgtcaggtttt-------------tagaaattgga----attttaaactttacttttagaggaaaattgtttatatactcttacgttttctgaatgtcagt--ctcaaatatcttctttggtataacag----------------------------------------------------------

upper sequence: Vv13s0067g03420.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: PP1S31_313V6.1 (Physcomitrella patens), 5'ss of exon 9
TTAATCACCTGGATTTTCTGGGAGTGCAGGTGGCATGGGTTACTGGACCGTGGTTTCTTTCCATTTTTATGAATATGCTTCCATGGGAAAGTGgtcagtctccatcatggcttatatagaaattagatgttatttggggcctacattgcatttaaaatctatttatatttctttgatttatggccatctcactaatcttagcattctcattgtcatgattgcattcataatgtcttggttacaagcttatgggttttgatggctttctcctgacttcag
  | ||| |||||    || ||||||||||| |||||||||| ||| || ||||| |||||||| ||| ||||  |  | |||||||| | ||||  |||    | |||    ||||  | |||   ||| ||||   || |   ||   |||  |  | || |  | |  |      ||  |  |       |||||| || |                                                                           
CAACTCATCTGGAGAGCCTTGGAGTGCAGGTAGCATGGGTTAGTGGCCCTTGGTTCCTTTCCATCTTTGTGAACGTCGTACCATGGGAGACTGgtatgtcatttttatg----atatc-atattttttgtaatttaaagctttagtt---tttggaggcaatattgactcgtcgacaatacag--aggaggagaatctt-gctt---------------------------------------------------------------------------