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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAACAGTTTGTTTATCCATCTATTCTTTGGTGGCTGGAATATTTGGCATGAATATTCCCTATACTTGGAATGATGATCATGGGTTCATGTTCAAATGGgtatgcaattatttcatctggtaaatttggttgtgaacttttgaatggatatactattccgtacccttgaatgattctcttttcctgttttcag

Basic information

species Vitis vinifera
transcript Vv05s0020g04720.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g04720.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA10G32350.1 (Glycine max), 5'ss of exon 10
TGGAACAGTTTGTTTATCCATCTATTCTTTGGTGGCTGGAATATTTGGCATGAATATTCCCTATACTTGGAATGATGATCATGGGTTCATGTTCAAATGGgtatgcaa-ttatttcatctggtaaatttggttgtg----aacttttgaatggatatactattccgtaccct------tgaat----------gattctcttttcctgttttcag
 ||||| |||||| ||||  |||| |||||||||||||  ||||||||||||||||| || ||||||||||| ||| | ||||| | |||||||||||||||||||||  |||| |   |  |  ||  |  ||||     || | |   | | |  |  |||  | ||         |||||           || | |  | | |  || |||
AGGAACTGTTTGTCTATCTTTCTACTCTTTGGTGGCTGCTATATTTGGCATGAATATCCCATATACTTGGAACGATAACCATGGTTACATGTTCAAATGGgtatgcaaactattactgtttatgcatgcgcatgtgtaaacacatatatgtagctgcaaaattttggacttgatattatgaattaagaatcaaaataccccatgctttcttgcag

upper sequence: Vv05s0020g04720.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA20G35260.1 (Glycine max), 5'ss of exon 10
TGGAACAGTTTGTTTATCCATCTATTCTTTGGTGGCTGGAATATTTGGCATGAATATTCCCTATACTTGGAATGATGATCATGGGTTCATGTTCAAATGGgtatgcaa-ttatttcatctggtaaatttggttgtgaact----tttgaatggatatactattccgtaccct------tgaatga----------ttctcttttcctgttttcag
|||||| |||||| ||||  |||| ||||||||||| |  ||||||||||||||||| || ||||||||||| ||  | ||||| | |||||||||||||||||||||  |||| |   |  |  ||     ||||  ||    | |   | | |  |  |||  | ||         ||||| |          | |||  |   |  || |||
TGGAACTGTTTGTCTATCTTTCTACTCTTTGGTGGCGGCTATATTTGGCATGAATATCCCATATACTTGGAACGAAAACCATGGTTACATGTTCAAATGGgtatgcaaactattactgtttatgcatgcacatgtgtgctcacatatatgttgctgcaaaattttggacttgatattatgaataaagaataaaaatactccatgttttcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71861547|gb|DT010602.1|DT010602
EST:     TGAATATTCCCTATACTTGGAATGATGATCATGGGTTCATGTTCAAATGG                         GTGGTTATCGTCACAGGTGTAAGTTGTGTTCTTCTTTTCGTAGTGATCATG
genomic: TGAATATTCCCTATACTTGGAATGATGATCATGGGTTCATGTTCAAATGGgtatgcaatt ... ctgttttcagGTGGTTATCGTCACAGGTGTAAGTTGTGCTCTTCTTTTCGTAGTGATCATG
EST: gi|77588493|gb|DV223461.1|DV223461
EST:     TGAATATTCCCTATACTTGGAATGATGATCATGGGTTCATGTTCAAATGG                         GTGGTTATCGTCACAGGTGTAAGTTGTGCTCTTCTTTTTGTAGTGATCATG
genomic: TGAATATTCCCTATACTTGGAATGATGATCATGGGTTCATGTTCAAATGGgtatgcaatt ... ctgttttcagGTGGTTATCGTCACAGGTGTAAGTTGTGCTCTTCTTTTCGTAGTGATCATG