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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACACCTGTGTTAGCATACCGATGCTTGATTAAAGAGGACGACAGAGATGCTCCGTCTTTTCTTTTCGAGTCAGTTGAAAATGGAAAAAGCATCAATATGgtgagtttttcttttgtcacatgatgcaattgagatagctctgttaagaatcccttgaagttactatctttattgggattctttcgaagcctgttaactt...

Basic information

species Physcomitrella patens
transcript PP1S77_252V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162171713|gb|FC348174.1|FC348174
EST:     CTCCGTCTTTTCTTTTCGAGTCAGTTGAAAATGGAAAAAGCATCAATATG                         GGAAGATACAGTATAGTCGGAGTTCAGCCCTCATTGGAAATCATTGCGAAG
genomic: CTCCGTCTTTTCTTTTCGAGTCAGTTGAAAATGGAAAAAGCATCAATATGgtgagttttt ... ccgatgacagGGAAGATACAGTATAGTCGGAGTTCAGCCCTCATTGGAGATCATTGCGAAG
EST: gi|100383453|gb|BY950237.1|BY950237
EST:     CTCCGTCTTTTCTTTTCGAGTCAGTTGAAAATGGAAAAAGCATCAATATG                         GGAAGATACAGTATAGTCGGAGTTCAGCCCTCATTGGAGATCATTGCGAAG
genomic: CTCCGTCTTTTCTTTTCGAGTCAGTTGAAAATGGAAAAAGCATCAATATGgtgagttttt ... ccgatgacagGGAAGATACAGTATAGTCGGAGTTCAGCCCTCATTGGAGATCATTGCGAAG
EST: gi|162167077|gb|FC342539.1|FC342539
EST:     CTCCGTCTTTTCTTTTCGAGTCAGTTGAAAATGGAAAAAGCATCAATATG                         GGAAGATACAGTATAGTCGGAGTTCAGCCCTCATTGGAAATCATTGCGAAG
genomic: CTCCGTCTTTTCTTTTCGAGTCAGTTGAAAATGGAAAAAGCATCAATATGgtgagttttt ... ccgatgacagGGAAGATACAGTATAGTCGGAGTTCAGCCCTCATTGGAGATCATTGCGAAG