1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTGCTCGCCAGGCCAGATGTGTCCCTTGCTCCAGCCCCGATGACCACCATCATGTGACGCCGCAGCTTCTTGCTGCGTTGCATGGGTGTTTCTTATCAAGgttagtccgtggttagctggcccgccgtcacaatctatgagctttgagtttaatttccagaacaccgagctgggtagaatgtgggcgtttgtgagaactg...
species | Physcomitrella patens |
transcript | PP1S100_248V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CATGTGACGCCGCAGCTTCTTGCTGCGTTGCATGGGTGTTTCTTATCAAG GTCCGTTATTATTTTGAATGCCGCCAAGGGAATCCTCGGGCACGCGATTCCEST: gi|18366633|gb|BJ198712.1|BJ198712
genomic: CATGTGACGCCGCAGCTTCTTGCTGCGTTGCATGGGTGTTTCTTATCAAGgttagtccgt ... cttcgcacagGTCCGTTATTATTTTGAATGCCGCCAAGGGAATCCTCGGGCACGCGATTCC
EST: CATGTGACGCCGCAGCTTCTTGCTGCGTTG-ATGGGTGTTTCTTATCAAG GTCCGTTATTATTTTGAATGCCGCCAAGGGAATCCTCGGGCACGCGATTCCEST: gi|18367628|gb|BJ199711.1|BJ199711
genomic: CATGTGACGCCGCAGCTTCTTGCTGCGTTGCATGGGTGTTTCTTATCAAGgttagtccgt ... cttcgcacagGTCCGTTATTATTTTGAATGCCGCCAAGGGAATCCTCGGGCACGCGATTCC
EST: CATGTGACGCCGCAGCTTCTTGCTGCGTTGCATGGGTGTTTCTTATCAAN GTCCGTTATTATTTTGAATGCCGCCAAGGGAATCCTCGGGCACGCGATTEST: gi|18345937|gb|BJ177980.1|BJ177980
genomic: CATGTGACGCCGCAGCTTCTTGCTGCGTTGCATGGGTGTTTCTTATCAAGgttagtccgt ... cttcgcacagGTCCGTTATTATTTTGAATGCCGCCAAGGGAATCCTCGGGCACGCGATT
EST: CATGTGACGCCGCAGCTTCTTGCTGCGTTGCATGGGTGTTTCTTATCAAG GNCCGTTATTATTTTGAATGCCGCCAAGGGAATCCTCGGGCACGCGATTCCEST: gi|18351068|gb|BJ183119.1|BJ183119
genomic: CATGTGACGCCGCAGCTTCTTGCTGCGTTGCATGGGTGTTTCTTATCAAGgttagtccgt ... cttcgcacagGTCCGTTATTATTTTGAATGCCGCCAAGGGAATCCTCGGGCACGCGATTCC
EST: CATGTGACGCCGCAGCTTCTTGCTGCGTTGCATGGGTGTTTCTTATCAAG GTCCGTTATTATTTTGAATGCCGCCAAGGGAATCCTCGGGCACGCGATTCC
genomic: CATGTGACGCCGCAGCTTCTTGCTGCGTTGCATGGGTGTTTCTTATCAAGgttagtccgt ... cttcgcacagGTCCGTTATTATTTTGAATGCCGCCAAGGGAATCCTCGGGCACGCGATTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCTCGCCAGGCCAGATGTGTCCCTTGCTCCAGCCCCGATGACCACCATCATGTGACGCCGCAGCTTCTTGCTGCGTTGCATGGGTGTTTCTTATCAAGgttagtccgtggttagctggcccgccgtcacaatctatgagctttgagtttaatttccagaacaccgagctgggtagaatgtgggcgtttgtgagaactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC