1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTGCTCAAGGTGCTAAGCTGCGCGGGGCTTCTATAATTATCGGTGTTGATACTAATCCTGAAAAGCAAGAAAAGGgtattttgcaaacttgcaatttcaatctaaacttcaattatgactttttcccatatacttacttttgttcatggcacag
species | Oryza sativa |
transcript | LOC_Os02g42520.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGCTTCTATAATTATCGGTGTTGATACTAATCCTGAAAAGCAAGAAAAGG GGAAAGCTTTTGGTGTCACAGATTTTATTAATCCAGAAGAATTGAATGAACEST: gi|29618347|gb|CB623359.1|CB623359
genomic: GGCTTCTATAATTATCGGTGTTGATACTAATCCTGAAAAGCAAGAAAAGGgtattttgca ... catggcacagGGAAAGCTTTTGGTGTCACAGATTTTATTAATCCAGAAGAATTGAATGAAC
EST: ATAATTATCGGTGTTGATACTAATCCTGAAAAGCAAGAAAAGG GGAAAGCTTTTGGTGTCACAGATTTTATTAATCCAGAAGAATTGAATGAACEST: gi|117244917|gb|CT849641.1|CT849641
genomic: ATAATTATCGGTGTTGATACTAATCCTGAAAAGCAAGAAAAGGgtattttgca ... catggcacagGGAAAGCTTTTGGTGTCACAGATTTTATTAATCCAGAAGAATTGAATGAAC
EST: GGCTTCTATAATTATCGGTGTTGATACTAATCCTGAAAAGCAAGAAAAGG GGAAAGCTTTTGGTGTCACAGATTTTATTAATCCAGAAGAATTGAATGAACEST: gi|58684609|gb|CK073296.1|CK073296
genomic: GGCTTCTATAATTATCGGTGTTGATACTAATCCTGAAAAGCAAGAAAAGGgtattttgca ... catggcacagGGAAAGCTTTTGGTGTCACAGATTTTATTAATCCAGAAGAATTGAATGAAC
EST: GGCTTCTATAATTATCGGTGTTGATACTAATCCTGAAAAGCAAGAAAAGG GGAAAGCTTTTGGTGTCACAGATTTTATTAATCCAGAAGAATTGAATGAAC
genomic: GGCTTCTATAATTATCGGTGTTGATACTAATCCTGAAAAGCAAGAAAAGGgtattttgca ... catggcacagGGAAAGCTTTTGGTGTCACAGATTTTATTAATCCAGAAGAATTGAATGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGCTCAAGGTGCTAAGCTGCGCGGGGCTTCTATAATTATCGGTGTTGATACTAATCCTGAAAAGCAAGAAAAGGgtattttgcaaacttgcaatttcaatctaaacttcaattatgactttttcccatatacttacttttgttcatggcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA