1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ACGAGATTGCAGGCGCAGGCGGCGGGGGTGCCCTACTACCAGCCGTCGCAGATGGCGTCGCTCGGCCCGGACGCGgtaacgaatctgatgatctcgatgcgggtgccgtgtgggtggtttgcaatttagttgtagttagcctccgatttcatgtggtgtgggggattcttgcttt...
species | Oryza sativa |
transcript | LOC_Os08g29720.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGGTGCCCTACTACCAGCCGTCGCAGATGGCGTCGCTCGGCCCGGACGCG ATATTATCTGATTTCAGATGTTCGCCGTCATGCACACGTGGTGTCATTTTGEST: gi|29661210|gb|CB657485.1|CB657485
genomic: GGGTGCCCTACTACCAGCCGTCGCAGATGGCGTCGCTCGGCCCGGACGCGgtaacgaatc ... tgctttccagATATTATCTGATTTCAGATGTTCGCCGTCATGCACACGTGGTGTCATTTTG
EST: GGGTGCCCTACTACCAGCCGTCGCAGATGGCGTCGCTCGGCCCGGACGCG ATATTATCTGATTTCAGATGTTCGCCGTCATGCACACGTGGTGTCATTTTGEST: gi|58667354|gb|CK056040.1|CK056040
genomic: GGGTGCCCTACTACCAGCCGTCGCAGATGGCGTCGCTCGGCCCGGACGCGgtaacgaatc ... tgctttccagATATTATCTGATTTCAGATGTTCGCCGTCATGCACACGTGGTGTCATTTTG
EST: GGGTGCCCTACTACCAGCCGTCGCAGATGGCGTCGCTCGGCCCGGACGCG ATATTATCTGATTTCAGATGTTCGCCGTCATGCACACGTGGTGTCATTTTGEST: gi|7273806|gb|AU083350.1|AU083350
genomic: GGGTGCCCTACTACCAGCCGTCGCAGATGGCGTCGCTCGGCCCGGACGCGgtaacgaatc ... tgctttccagATATTATCTGATTTCAGATGTTCGCCGTCATGCACACGTGGTGTCATTTTG
EST: GGGTGCCCTACTACCAGCCGTCGCAGATNGCGTCGCTCGGCCCGGACGCG ATATTATCTGATTTCAGATGTTCGCCGTCATNCACACGTGGTGTCATTTTGEST: gi|58693531|gb|CK082218.1|CK082218
genomic: GGGTGCCCTACTACCAGCCGTCGCAGATGGCGTCGCTCGGCCCGGACGCGgtaacgaatc ... tgctttccagATATTATCTGATTTCAGATGTTCGCCGTCATGCACACGTGGTGTCATTTTG
EST: GGGTGCCCTACTACCAGCCGTCGCAGATGGCGTCGCTCGGCCCGGACGCG ATATTATCTGATTTCAGATGTTCGCCGTCATGCACACGTGGTGTCATTTTGEST: gi|58672713|gb|CK061399.1|CK061399
genomic: GGGTGCCCTACTACCAGCCGTCGCAGATGGCGTCGCTCGGCCCGGACGCGgtaacgaatc ... tgctttccagATATTATCTGATTTCAGATGTTCGCCGTCATGCACACGTGGTGTCATTTTG
EST: GGGTGCCCTACTACCAGCCGTCGCAGATGGCGTCGCTCGGCCCGGACGCG ATATTATCTGATTTCAGATGTTCGCCGTCATGCACACGTGGTGTCATTTTGEST: gi|25797756|gb|CA753717.1|CA753717
genomic: GGGTGCCCTACTACCAGCCGTCGCAGATGGCGTCGCTCGGCCCGGACGCGgtaacgaatc ... tgctttccagATATTATCTGATTTCAGATGTTCGCCGTCATGCACACGTGGTGTCATTTTG
EST: AGCCGTCGCAGATGGCGTCGCTCGGCCCGGACGCG ATATTATCTGATTTCAGATGTTCGCCGTCATGCACACGTGGTGTCATTTTGEST: gi|58607537|gb|CK035570.1|CK035570
genomic: AGCCGTCGCAGATGGCGTCGCTCGGCCCGGACGCGgtaacgaatc ... tgctttccagATATTATCTGATTTCAGATGTTCGCCGTCATGCACACGTGGTGTCATTTTG
EST: GGGTGCCCTACTACCAGCCGTCGCAGATGGCGTCGCTCGGCCCGGACGCG ATAGTGATCTGATTTCAGATGTTCGCCGTCATGCACACGTGGTGTCATTTTEST: gi|7274031|gb|AU083575.1|AU083575
genomic: GGGTGCCCTACTACCAGCCGTCGCAGATGGCGTCGCTCGGCCCGGACGCGgtaacgaatc ... tgctttccagATA-TTATCTGATTTCAGATGTTCGCCGTCATGCACACGTGGTGTCATTTT
EST: GGGTGCCCTACTACCAGCCGTCGCAGATGGCGTCGCTCGGCCCGGACGCG ATATTATCTGATTTCAGATGTTCGCCGTCATGCACACGTGGTGTCACTTTTEST: gi|29680567|gb|CB676842.1|CB676842
genomic: GGGTGCCCTACTACCAGCCGTCGCAGATGGCGTCGCTCGGCCCGGACGCGgtaacgaatc ... tgctttccagATATTATCTGATTTCAGATGTTCGCCGTCATGCACACGTGGTGTCA-TTTT
EST: GGGTGCCCTACTACCAGCCGTCGCAGATGGCGTCGCTCGGCCCGGACGCG ATATTATCTGATTTCAGATGTTCGCCGTCATGCACACGTGGTGTCATTTTGEST: gi|29677504|gb|CB673779.1|CB673779
genomic: GGGTGCCCTACTACCAGCCGTCGCAGATGGCGTCGCTCGGCCCGGACGCGgtaacgaatc ... tgctttccagATATTATCTGATTTCAGATGTTCGCCGTCATGCACACGTGGTGTCATTTTG
EST: GGGTGCCCTACTACCAGCCGTCGCAGATGGCGTCGCTCGGCCCGGACGCG ATATTATCTGATTTCAGATGTTCGCCGTCATGCACACGTGGTGTCATTTTG
genomic: GGGTGCCCTACTACCAGCCGTCGCAGATGGCGTCGCTCGGCCCGGACGCGgtaacgaatc ... tgctttccagATATTATCTGATTTCAGATGTTCGCCGTCATGCACACGTGGTGTCATTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGAGATTGCAGGCGCAGGCGGCGGGGGTGCCCTACTACCAGCCGTCGCAGATGGCGTCGCTCGGCCCGGACGCGgtaacgaatctgatgatctcgatgcgggtgccgtgtgggtggtttgcaatttagttgtagttagcctccgatttcatgtggtgtgggggattcttgcttt
- - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - CAGATG