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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTTGGAATACTTGAGAAGACAACCAAAGGGAAAGAAGTATAAAGCCCTGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaacatgcttcatccagtacatttttatttgatatatataagatgagagtattcttgttgcttttatgggattgtatttggagcaagagcacct...

Basic information

species Oryza sativa
transcript LOC_Os01g62440.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g62440.3 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G082260_T02 (Zea mays), 5'ss of exon 12
GTTGTTGGAATACTTGAGAAGACAACCAAAGGGAAAGAAGTATAAAGCCCTGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaacatgcttcatccagtacatttttatttgatatatataagatgagagtattcttgttgcttttatggg-attgtatttggagcaagagcacct
| ||||||||||||||||  ||||||||||||| |  ||||| | ||| |||||||| |||||| | ||||||||| ||| | || ||||| |  | |||||  ||  || | || | |    ||  |||||| ||| | || || |    |    | | || ||| ||| |     || |||||| |||||  |   |  
GCTGTTGGAATACTTGAGGCGACAACCAAAGGGGAGAAAGTACAGAGCACTGATTCTGAAGTTTGTCAAGGATCGTATGGGAGCTCTGCTTTTGGTGGAGgtgaactgactttctccttatgataagtttttacttgttttagattatcatatcacactatttttgttttcaccaatatagtatttagagcagtatggct-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88668990|gb|CI719947.1|CI719947
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAAC
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAAC
EST: gi|88666182|gb|CI716338.1|CI716338
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGAT
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGAT
EST: gi|88973217|gb|CI717746.1|CI717746
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGC
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGC
EST: gi|88905635|gb|CI712934.1|CI712934
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACCTGGGAAAGTGGGAGATGA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAAC-TGGGAAAGTGGGAGATGA
EST: gi|88973605|gb|CI718033.1|CI718033
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTA
EST: gi|88668065|gb|CI722804.1|CI722804
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|84117186|gb|CD150953.1|CD150953
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|88973910|gb|CI718318.1|CI718318
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGG
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGG
EST: gi|88670969|gb|CI725085.1|CI725085
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|88665660|gb|CI715816.1|CI715816
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|88671436|gb|CI725552.1|CI725552
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|4716411|gb|AU057527.1|AU057527
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|88667770|gb|CI722509.1|CI722509
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|88672844|gb|CI726960.1|CI726960
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|88595326|gb|CI714147.1|CI714147
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|29670924|gb|CB667199.1|CB667199
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|88673071|gb|CI727186.1|CI727186
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|86436915|gb|CI118637.1|CI118637
EST:     CTTTGCTTGTTATAGAG                         CTTGGGATCCCAAGCTACAGCCGT-GTTTCAACTGGGAAAGTGGGA-ATGA
genomic: CTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGAT-CCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGA
EST: gi|88594904|gb|CI715060.1|CI715060
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTT
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTT
EST: gi|88674757|gb|CI728870.1|CI728870
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|88972691|gb|CI717417.1|CI717417
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGT
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGT
EST: gi|88667581|gb|CI722318.1|CI722318
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|88675010|gb|CI729123.1|CI729123
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGG
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGG
EST: gi|88672883|gb|CI726999.1|CI726999
EST:     TGATTCTTAAGTTTATTAAGGATCGTCTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|88676179|gb|CI730292.1|CI730292
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATG
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATG
EST: gi|88665483|gb|CI715639.1|CI715639
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|89172650|gb|CI721709.1|CI721709
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAG
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAG
EST: gi|88670202|gb|CI723723.1|CI723723
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGCTTCAACTGGGAAAGTGGG
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGG
EST: gi|88908927|gb|CI716652.1|CI716652
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGGGGTTTCAACTGGG
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGG
EST: gi|88676890|gb|CI731003.1|CI731003
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|88904571|gb|CI711870.1|CI711870
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTG
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTG
EST: gi|88667235|gb|CI715393.1|CI715393
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCA
EST: gi|15847582|gb|BI795872.1|BI795872
EST:     TGATTCTTAAGTTTATTAAGGATCGTTT-GCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|88669369|gb|CI723287.1|CI723287
EST:     TGATTCTTAAGTTTATTAAGGATCGTTCGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|88904942|gb|CI712241.1|CI712241
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGA
EST: gi|88972452|gb|CI717192.1|CI717192
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTA
EST: gi|89172415|gb|CI721474.1|CI721474
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|89171756|gb|CI720815.1|CI720815
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|88904358|gb|CI711666.1|CI711666
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
EST: gi|88671281|gb|CI724327.1|CI724327
EST:     TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAG                         GTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA
genomic: TGATTCTTAAGTTTATTAAGGATCGTTTGGCAACTTTGCTTGTTATAGAGgtacacaaac ... tacttcgcagGTTGGGATCCAAGCTACAGCCGTGGTTTCAACTGGGAAAGTGGGAGATGAA