Sequence
atgc intronic sequence ATGC exonic sequenceGTGGTCCCTGGGAGCGATAATGTATGAAATGTTAGTGGGGTATCCGCCCTTTTATTCAGATGAACCAATGTTGACTTGTAGAAAGgtaatgtctggatcaactgtcgacaaattgggatgaatattgtataaatttaggtttcacacatgtaggatgttgacttcactgaattttggtgggcacc...
Basic information
species | Glycine max |
transcript | GLYMA20G35110.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G35110.1 (Glycine max), 5'ss of exon 7
lower sequence: AT4G14350.3 (Arabidopsis thaliana), 5'ss of exon 8
GTGGTCCCTGGGAGCGATAATGTATGAAATGTTAGTGGGGTATCCGCCCTTTTATTCAGATGAACCAATGTTGACTTGTAGAAAGgtaatgtctggatcaactgtcgacaaattgggatgaatattgta--taaattta-ggtttca---cacatgtaggatgttgacttcactgaattttggtgggcacc---------------------------------------------------
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GTGGTCTCTTGGCGCCATTATGTATGAAATGCTTGTGGGGTTTCCGCCCTTTTATTCAGATGACCCAATGACAACTTGTAGGAAGgtaattaatccattcctttttgaatctttcattttaatattgaaggcagactggcgatttcaagtcttacatttaattttagtctttttgtatctctttggtaattctaatgtggaaacttacctcttctcgattcattatcttcccccttatgcag
upper sequence: GLYMA20G35110.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G23310.1 (Arabidopsis thaliana), 5'ss of exon 8
GTGGTCCCTGGGAGCGATAATGTATGAAATGTTAGTGGGGTATCCGCCCTTTTATTCAGATGAACCAATGTTGACTTGTAGAAAGgtaatg-tctggatcaactgtcgac----aaattgggatgaatattgtataaatttaggttt---cacacatgtaggatgttgacttc--actgaattttggtgggcacc-----------------------------------------
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GTGGTCACTTGGTGCGATCATGTATGAAATGCTTGTGGGGTTTCCACCATTTTATTCAGACGAGCCAATGACAACTTGTAGAAAGgtaccaatcctcactttttgtggactttaactctgttctagacttctagtaatctcaaatttttgcattcgatttagttcttgatcttctaatgatacctctttggtaatatatgcacatctctgaatacttgttattgtttttaatgcag
upper sequence: GLYMA20G35110.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv05s0049g01220.t01 (Vitis vinifera), 5'ss of exon 7
GTGGTCCCTGGGAGCGATAATGTATGAAATGTTAGTGGGGTATCCGCCCTTTTATTCAGATGAACCAATGTTGACTTGTAGAAAGgtaatgtctggatcaactgtcgacaaattgggatgaatattgtataaatttaggtttcacacatgtaggatgttgacttcactgaattttggtgggcacc---------
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GTGGTCTCTTGGTGCTATCATGTACGAAATGCTTGTGGGATATCCACCTTTTTATTCAGATGAACCTATGACAACTTGTAGGAAGgtagttcttggaatg--------ctgatcttgaaagatgttgtctgtgtaaatgtttc-tacaattgcaccaatgagtttgtaaaatgcttatctccttcacatgctaa
upper sequence: GLYMA20G35110.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ28086 (Selaginella moellendorffii), 5'ss of exon 7
GTGGTCCCTGGGAGCGATAATGTATGAAATGTTAGTGGGGTATCCGCCCTTTTATTCAGATGAACCAATGTTGACTTGTAGAAAGgta-------atgtctggatcaactgtcgacaaattggga---tgaatattgtataa------atttaggt---ttcacacatgtaggatgttgacttcactgaattttggtggg-cacc---------------
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GTGGTCTCTTGGAGCTATAATGTACGAGATGCTAGTCGGGTATCCGCCCTTCTATTCCGACGAACCGATGTCTACTTGCCGGAAGgtacgccatcacatcttgattgactattcatgaattttgtactcgcttgcctcataactacgcatttttgtatttttatgtgtgattgttattgatcagatagcatcgcgttaagatgtcttgtttcattgacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|20814304|gb|BQ298782.1|BQ298782EST: GATGAACCAATGTTGACTTGTAGAAAG ATAGTAAATTGGGAGAAATTATTTAAAATTTCCAGAAGAAGTTAAAATTTC
genomic: GATGAACCAATGTTGACTTGTAGAAAGgtaatgtctg ... aaatttgcagATAGTAAATT-GGAGAAATTATTTAAAATTTCCAGAAGAAGTTAAAATTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGTCCCTGGGAGCGATAATGTATGAAATGTTAGTGGGGTATCCGCCCTTTTATTCAGATGAACCAATGTTGACTTGTAGAAAGgtaatgtctggatcaactgtcgacaaattgggatgaatattgtataaatttaggtttcacacatgtaggatgttgacttcactgaattttggtgggcacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggtgg