1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTAAGTATGTTGGAAATCGTCCTATAAAACTACGCAAGAGTAAGTGGAGGGAGAGGACAGATTATGAAGCACTGGAGAAACAGAAGgtagcaattttctttgtcaatgatttgaaattgttctgttaaacttagccttttgtatgtccaacttaattcttctattgtttacatggcag
species | Glycine max |
transcript | GLYMA20G36570.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGGAGAGGACAGATTATGAAGCACTGGAGAAACAGAAG AATCACATTCAAAAGAAACCGAAAATGCCAAGGAAAGGTGTGCTGCACAAGEST: gi|193601564|gb|FK549455.1|FK549455
genomic: GGGAGAGGACAGATTATGAAGCACTGGAGAAACAGAAGgtagcaattt ... tacatggcagAATCACATTCAAAAGAAACCGAAAATGCCAAGGAAAGGTGTGCTGCACAAG
EST: AGAGTAAGTGGAGGGAGAGGACAGATTATGAAGCACTGGAGAAACAGAAG AAATCACATTCAAAAGAEST: gi|31462737|gb|CD404765.1|CD404765
genomic: AGAGTAAGTGGAGGGAGAGGACAGATTATGAAGCACTGGAGAAACAGAAGgtagcaattt ... tacatggcagAA-TCACATTCAAAAGA
EST: AGAGTAAGTGGAGGGAGAGGACAGATTATGAAGCACTGGAGAAACAGAAG AATCACATTCCAAAGAAACCGAAAATGCCAAGGAAAGGTGTGCTGCACAAG
genomic: AGAGTAAGTGGAGGGAGAGGACAGATTATGAAGCACTGGAGAAACAGAAGgtagcaattt ... tacatggcagAATCACATTCAAAAGAAACCGAAAATGCCAAGGAAAGGTGTGCTGCACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAAGTATGTTGGAAATCGTCCTATAAAACTACGCAAGAGTAAGTGGAGGGAGAGGACAGATTATGAAGCACTGGAGAAACAGAAGgtagcaattttctttgtcaatgatttgaaattgttctgttaaacttagccttttgtatgtccaacttaattcttctattgtttacatggcag
- - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA