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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTAAGATTACAGAGGAGCAGCTGAAGGCATCTGCTGCACAACAGCAGGGGCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTGgttagtcttttttgtggcacacaaggcacttttttttttctccctcttttcaccctctttgttctacacctttgatatgattggcttaatcttgatgtcaacag

Basic information

species Glycine max
transcript GLYMA20G30120.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31467450|gb|CD409478.1|CD409478
EST:     GCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTG                         CTGAGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAA
genomic: GCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTGgttagtcttt ... atgtcaacagCTGAGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAA
EST: gi|31458767|gb|CD400795.1|CD400795
EST:     GCATACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTG                         CTGAGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAA
genomic: GCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTGgttagtcttt ... atgtcaacagCTGAGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAA
EST: gi|15204816|gb|BI427584.1|BI427584
EST:     GCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTG                         CTGAGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAA
genomic: GCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTGgttagtcttt ... atgtcaacagCTGAGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAA
EST: gi|151402645|gb|EV272458.1|EV272458
EST:     GCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTG                         CTGAGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAA
genomic: GCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTGgttagtcttt ... atgtcaacagCTGAGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAA
EST: gi|31473277|gb|CD415290.1|CD415290
EST:     GCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTG                         CTGAGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAA
genomic: GCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTGgttagtcttt ... atgtcaacagCTGAGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAA
EST: gi|22525441|gb|BU084252.1|BU084252
EST:     GCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTG                         CTGAGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAA
genomic: GCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTGgttagtcttt ... atgtcaacagCTGAGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAA
EST: gi|192334066|gb|FK026223.1|FK026223
EST:     GCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTG                         CTGAGGAAACAGCTACTACAGTGCCTCCACCTTTGAAGCCAGAAAGTGAAA
genomic: GCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTGgttagtcttt ... atgtcaacagCTGAGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAA
EST: gi|298179287|gb|HO027758.1|HO027758
EST:     GCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTG                         CTGGGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAA
genomic: GCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTGgttagtcttt ... atgtcaacagCTGAGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTAAGATTACAGAGGAGCAGCTGAAGGCATCTGCTGCACAACAGCAGGGGCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTGgttagtcttttttgtggcacacaaggcacttttttttttctccctcttttcaccctctttgttctacacctttgatatgattggcttaatcttgatgtcaacag

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