1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAATTTAGCGATCCTCGGGATGCTGATGATGCTAGATATAGCTTGGATGGTCGTGATGTTGAAGGAAGTCGTATCATTGTGGAATTTGCCAAGGGGgtaggaattacttcccttcatggtttatctacataattttattttattttattttagacttggttatctcatttgtaactaatgatcaaagggatgtttt...
species | Glycine max |
transcript | GLYMA19G35990.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATGGTCGTGATGTTGAAGGAAGTCGTATCATTGTGGAATTTGTCAAGGGG GGTCCTCGTGGTTCCCGGGAAAACTTGGGTCGGGGTCTACCTCCTGGATCTEST: gi|298180260|gb|HO025475.1|HO025475
genomic: ATGGTCGTGATGTTGAAGGAAGTCGTATCATTGTGGAATTTGCCAAGGGGgtaggaatta ... aattaatcagGGTCCTCGTGGTTCCCGGGAAAACTTGGGTCGGGGTCTACCTCCTGGATCT
EST: ATGGTCGTGATGTTGAAGGAAGTCGTATCATTGTGGAATTTGCCAAGGGG GGTCCTCGTGGTTCCCGGGAAAACTTGGGTCGGGGTCTACCTCCTGGATCTEST: gi|7042407|gb|AW472301.1|AW472301
genomic: ATGGTCGTGATGTTGAAGGAAGTCGTATCATTGTGGAATTTGCCAAGGGGgtaggaatta ... aattaatcagGGTCCTCGTGGTTCCCGGGAAAACTTGGGTCGGGGTCTACCTCCTGGATCT
EST: ATGGTCGTGATGTTGAAGGAAGTCGTATCATTGTGGAATTTGCCAAGGGG GGTCCTCGTGGTTCCCGGGAAAACTTGGGTCGGGGTCTACCTCCTGGATCTEST: gi|298165666|gb|HO008637.1|HO008637
genomic: ATGGTCGTGATGTTGAAGGAAGTCGTATCATTGTGGAATTTGCCAAGGGGgtaggaatta ... aattaatcagGGTCCTCGTGGTTCCCGGGAAAACTTGGGTCGGGGTCTACCTCCTGGATCT
EST: ATGGTCGTGATGTTGAAGGAAGTCGTATCATTGTGGAATTTGCCAAGGGG GGTCCTCGTGGTTCCCGGGAAAACTTGGGTCGGGGTCTACCTCCTGGATCT
genomic: ATGGTCGTGATGTTGAAGGAAGTCGTATCATTGTGGAATTTGCCAAGGGGgtaggaatta ... aattaatcagGGTCCTCGTGGTTCCCGGGAAAACTTGGGTCGGGGTCTACCTCCTGGATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATTTAGCGATCCTCGGGATGCTGATGATGCTAGATATAGCTTGGATGGTCGTGATGTTGAAGGAAGTCGTATCATTGTGGAATTTGCCAAGGGGgtaggaattacttcccttcatggtttatctacataattttattttattttattttagacttggttatctcatttgtaactaatgatcaaagggatgtttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcccttc