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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATCAAAGCAATGGAATACTTCTACAAGGAGATTTATGCACTCAATGGCATCAGTGATATCCAATTTCCTCAACACTACCCTGTCTCTAGGCTTTTGGgtacaataccacaacctctttctctgttaattcacttcaattcatcagtcacccatttgaatgcttgattaacag

Basic information

species Glycine max
transcript GLYMA20G36490.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26058789|gb|CA801703.1|CA801703
EST:     CATCAGTGATATCCAATTTCCTCAACACTACCCTGTCTCTAGGCTTTTGG                         GCTGTGTTGAAGTGGTTGGCTGCTTAACACGTGATGAGCTAGCATGCTGGG
genomic: CATCAGTGATATCCAATTTCCTCAACACTACCCTGTCTCTAGGCTTTTGGgtacaatacc ... tgattaacagGCTGTGTTGAAGTGGTTGGCTGCTTAACACGTGATGAGCTAGCATGCTGGG
EST: gi|26058846|gb|CA801760.1|CA801760
EST:     CATCAGTGATATCCAATTTCCTCAACACTACCCTGTCTCTAGGCTTTTGG                         GCTGTGTTGAAGTGGTTGGCTGCTTAACACGTGATGAGCTAGCATGCTGGG
genomic: CATCAGTGATATCCAATTTCCTCAACACTACCCTGTCTCTAGGCTTTTGGgtacaatacc ... tgattaacagGCTGTGTTGAAGTGGTTGGCTGCTTAACACGTGATGAGCTAGCATGCTGGG
EST: gi|298163414|gb|HO012147.1|HO012147
EST:     CATCAGTGATATCCAATTTCCTCAACACTACCCTGTCTCTAGGCTTTTGG                         GCTGTGTTGAAGTGGTTGGCTGCTTAACACGTGATGAGCTAGCATGCTGGG
genomic: CATCAGTGATATCCAATTTCCTCAACACTACCCTGTCTCTAGGCTTTTGGgtacaatacc ... tgattaacagGCTGTGTTGAAGTGGTTGGCTGCTTAACACGTGATGAGCTAGCATGCTGGG
EST: gi|13788034|gb|BG650626.1|BG650626
EST:     CATCAGTGATATCCAATTTCCTCAACACTACCCTGTCTCTAGGCTTTTGG                         GCTGTGTTGAAGTGGTTGGCTGCTTAACACGTGATGAGCTAGCATGCTGGG
genomic: CATCAGTGATATCCAATTTCCTCAACACTACCCTGTCTCTAGGCTTTTGGgtacaatacc ... tgattaacagGCTGTGTTGAAGTGGTTGGCTGCTTAACACGTGATGAGCTAGCATGCTGGG
EST: gi|298193002|gb|HO033447.1|HO033447
EST:     CATCAGTGATATCCAATTTCCTCAACACTACCCTGTCTCTAGGCTTTTGG                         GCTGTGTTGAAGTGGTTGGCTGCTTAACACGTGATGAGCTAGCATGCTGGG
genomic: CATCAGTGATATCCAATTTCCTCAACACTACCCTGTCTCTAGGCTTTTGGgtacaatacc ... tgattaacagGCTGTGTTGAAGTGGTTGGCTGCTTAACACGTGATGAGCTAGCATGCTGGG
EST: gi|24136047|gb|BU926557.1|BU926557
EST:     CATCAGTGATATCCAATTTCCTCAACACTACCCTGTCTCTAGGCTTTTGG                         GCTGTGTTGAAGTGGTTGGCTGCTTAACACGTGATGAGCTAGCATGCTGGG
genomic: CATCAGTGATATCCAATTTCCTCAACACTACCCTGTCTCTAGGCTTTTGGgtacaatacc ... tgattaacagGCTGTGTTGAAGTGGTTGGCTGCTTAACACGTGATGAGCTAGCATGCTGGG