Sequence
atgc intronic sequence ATGC exonic sequenceTAGTGCAATGGCGAATCCGAATTTTGACGGGAAAGGAACTTACTTGATCTTCAATGTCGGAGATGCAATTTTCATTAGTGATTTGAATTCACAAGACAAGgtatattggtcggagtttgatgaattttaatataagaattttggatttgcttcatcagaggtttcttgttgcgtgtag
Basic information
species | Glycine max |
transcript | GLYMA19G36480.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G36480.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G37160.1 (Arabidopsis thaliana), 5'ss of exon 2
TAGTGCAATGGCGAATCCGAATTTTGACGGGAAAGGAACTTACTTGATCTTCAATGTCGGAGATGCAATTTTCATTAGTGATTTGAATTCACAAGACAAGgta----------tattggtcggagtttgatgaattttaatataagaattttgg-atttgcttcatcagaggtttcttgttgcgtgtag
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TACCTCAGCTACTAATACAAATTTCGATGGGAAAGGAACTTACTTAGTCTTCAATGTTGGTGATGCTATTTTTATTAGTGACTTGAACTCGCAGGACAAGgtaatcttacctctactcgttttgttttcttaagatttgatttgatctgctggttgtttgtcacatttatgagaaattatttgatttag
upper sequence: GLYMA19G36480.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G53390.1 (Arabidopsis thaliana), 5'ss of exon 2
TAGTGCAATGGCGAATCCGAATTTTGACGGGAAAGGAACTTACTTGATCTTCAATGTCGGAGATGCAATTTTCATTAGTGATTTGAATTCACAAGACAAGgtatattggtcggagtttgatgaattttaatataagaattttggattt---gcttcatcagaggtttcttgttgcgtgtag--------------------------
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TACTTCGATGACAAATACGAATTTTGATGGGAAAGGAACTTACTTGGTCTTCAATGTGAGTGATGCTATTTTTATCTGTGACTTGAACTCACAAGAAAAGgtaatttcttc----ttttctttgttttccttttagtgatttggctgtaatgttctgttttttgttttgttttggaagtaatggtttaggaaacttctttgatgtag
upper sequence: GLYMA19G36480.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 2
TAGTGCAATGGCGAATCCGAATTTTGACGGGAAAGGAACTTACTTGATCTTCAATGTCGGAGATGCAATTTTCATTAGTGATTTGAATTCACAAGACAAGgtatattggtcggagtttgatgaattttaatataagaatt-----------ttggatttgcttcatcagaggtttcttgttgcgtgtag
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TAATCCGACAGGTACTTCCAATTTTGATGGGAAAGGGACTTACTTGATTTTCAATGTTGGGGATGCAATATTTATCTGTGATTTGAATACGCAAGATAAGgtaatttgatgttttctggctgcggttttaatcaataattcatgtcttgcgttggaattggattttgagaggtttgttttttaatgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9259371|gb|BE347518.1|BE347518EST: TCAATGTCGGAGATGCAATTTTCATTAGTGATTTGAATTCACAAGACAAG GACCCCATAAAGTCTATTCACTTCAGTAACTCGAATCCTGTGTGCCACGCA
genomic: TCAATGTCGGAGATGCAATTTTCATTAGTGATTTGAATTCACAAGACAAGgtatattggt ... ttgcgtgtagGACCCCATAAAGTCTATTCACTTCAGTAACTCGAATCCTGTGTGCCACGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAGTGCAATGGCGAATCCGAATTTTGACGGGAAAGGAACTTACTTGATCTTCAATGTCGGAGATGCAATTTTCATTAGTGATTTGAATTCACAAGACAAGgtatattggtcggagtttgatgaattttaatataagaattttggatttgcttcatcagaggtttcttgttgcgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG