1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CAACCCTTTTGGGTTTGTCACTGACAACCCTTCTAGCCGAAATGCCATTCAACTGCCTGAAAACCCTGCTGAGGATGGCAACGTTGGCCAAATGCTATATgtactaatctttctttcctttcctccttctagcttccagttccttttaattaagttttgatattgaagactttatgttatttatgcatgacaagacatttgtttctccaactatttatgttgtagtgatgatagttctcctttagtgggaaagtagtaatagtttttgtgttgctag
species | Glycine max |
transcript | GLYMA07G03260.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AACTGCCTGAAAACCCTGCTGAGGATGGCAACGTCGGCCAAATGCTATAT AGGATAGAAGACAAGGGCAAGGAATATGGGTCATATGTTAAATCTGGCAAGEST: gi|17401151|gb|BM177933.1|BM177933
genomic: AACTGCCTGAAAACCCTGCTGAGGATGGCAACGTTGGCCAAATGCTATATgtactaatct ... gtgttgctagAGGATAGAAGACAAGGGCAAGGAATATGGGTCATATGTTAAATCTGGCAAG
EST: AACTGCCTGAAAACCCTGCTGAGGATGGCAACGTTGGCCAAATGCTATAT AGGATAGAAGACAAGGGCAAGGAATATGGGTCATATGTTAAATCTGGCAAGEST: gi|209727721|gb|BW658458.1|BW658458
genomic: AACTGCCTGAAAACCCTGCTGAGGATGGCAACGTTGGCCAAATGCTATATgtactaatct ... gtgttgctagAGGATAGAAGACAAGGGCAAGGAATATGGGTCATATGTTAAATCTGGCAAG
EST: AACTGCCTGAAAACCCTGCTGAGGATGGCAACGTCCGCCAAATGCTATAT AGGATAGAAGACAAGGGCAAGGAATATGGGTCATATGTTAAATCTGGCAAGEST: gi|5058434|gb|AI736966.1|AI736966
genomic: AACTGCCTGAAAACCCTGCTGAGGATGGCAACGTTGGCCAAATGCTATATgtactaatct ... gtgttgctagAGGATAGAAGACAAGGGCAAGGAATATGGGTCATATGTTAAATCTGGCAAG
EST: ACTGCCTGAAAACCCTGCTGAGGATGGCNNACGTTGGCCAAATGCTATAT AGGATAGAAGACAAGGGCAAGGAATATGGGTCATATGTTAAATCTGGCAAGEST: gi|11687352|gb|BF594992.1|BF594992
genomic: ACTGCCTGAAAACCCTGCTGAGGATGGCA-ACGTTGGCCAAATGCTATATgtactaatct ... gtgttgctagAGGATAGAAGACAAGGGCAAGGAATATGGGTCATATGTTAAATCTGGCAAG
EST: AACTGCCTGAAAACCCTGCTGAGGATGGCAACGTTGGCCAAATGCTATAT AGGATAGAAGACAAGGGCAAGGAATATGGGTCATATGTTAAATCTGGCAAGEST: gi|209703108|gb|BW673293.1|BW673293
genomic: AACTGCCTGAAAACCCTGCTGAGGATGGCAACGTTGGCCAAATGCTATATgtactaatct ... gtgttgctagAGGATAGAAGACAAGGGCAAGGAATATGGGTCATATGTTAAATCTGGCAAG
EST: AACTGCCTGAAAACCCTGCTGAGGATGGCAACGTCGGCCAAATGCTGTAT AGGATAGAAGACAAGGGCAAGGAATATGGGTCATATGTTAAATCTGGCAAG
genomic: AACTGCCTGAAAACCCTGCTGAGGATGGCAACGTTGGCCAAATGCTATATgtactaatct ... gtgttgctagAGGATAGAAGACAAGGGCAAGGAATATGGGTCATATGTTAAATCTGGCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACCCTTTTGGGTTTGTCACTGACAACCCTTCTAGCCGAAATGCCATTCAACTGCCTGAAAACCCTGCTGAGGATGGCAACGTTGGCCAAATGCTATATgtactaatctttctttcctttcctccttctagcttccagttccttttaattaagttttgatattgaagactttatgttatttatgcatgacaagacatttgtttctccaactatttatgttgtagtgatgatagttctcctttagtgggaaagtagtaatagtttttgtgttgctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG