Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACCCTTTTGGGTTTGTCACTGACAACCCTTCTAGCCGAAATGCCATTCAACTGCCTGAAAACCCTGCTGAGGATGGCAACGTTGGCCAAATGCTATATgtactaatctttctttcctttcctccttctagcttccagttccttttaattaagttttgatattgaagactttatgttatttatgcatgacaagacatttgtttctccaactatttatgttgtagtgatgatagttctcctttagtgggaaagtagtaatagtttttgtgttgctag

Basic information

species Glycine max
transcript GLYMA07G03260.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213603590|gb|DB962722.1|DB962722
EST:     AACTGCCTGAAAACCCTGCTGAGGATGGCAACGTCGGCCAAATGCTATAT                         AGGATAGAAGACAAGGGCAAGGAATATGGGTCATATGTTAAATCTGGCAAG
genomic: AACTGCCTGAAAACCCTGCTGAGGATGGCAACGTTGGCCAAATGCTATATgtactaatct ... gtgttgctagAGGATAGAAGACAAGGGCAAGGAATATGGGTCATATGTTAAATCTGGCAAG
EST: gi|17401151|gb|BM177933.1|BM177933
EST:     AACTGCCTGAAAACCCTGCTGAGGATGGCAACGTTGGCCAAATGCTATAT                         AGGATAGAAGACAAGGGCAAGGAATATGGGTCATATGTTAAATCTGGCAAG
genomic: AACTGCCTGAAAACCCTGCTGAGGATGGCAACGTTGGCCAAATGCTATATgtactaatct ... gtgttgctagAGGATAGAAGACAAGGGCAAGGAATATGGGTCATATGTTAAATCTGGCAAG
EST: gi|209727721|gb|BW658458.1|BW658458
EST:     AACTGCCTGAAAACCCTGCTGAGGATGGCAACGTCCGCCAAATGCTATAT                         AGGATAGAAGACAAGGGCAAGGAATATGGGTCATATGTTAAATCTGGCAAG
genomic: AACTGCCTGAAAACCCTGCTGAGGATGGCAACGTTGGCCAAATGCTATATgtactaatct ... gtgttgctagAGGATAGAAGACAAGGGCAAGGAATATGGGTCATATGTTAAATCTGGCAAG
EST: gi|5058434|gb|AI736966.1|AI736966
EST:     ACTGCCTGAAAACCCTGCTGAGGATGGCNNACGTTGGCCAAATGCTATAT                         AGGATAGAAGACAAGGGCAAGGAATATGGGTCATATGTTAAATCTGGCAAG
genomic: ACTGCCTGAAAACCCTGCTGAGGATGGCA-ACGTTGGCCAAATGCTATATgtactaatct ... gtgttgctagAGGATAGAAGACAAGGGCAAGGAATATGGGTCATATGTTAAATCTGGCAAG
EST: gi|11687352|gb|BF594992.1|BF594992
EST:     AACTGCCTGAAAACCCTGCTGAGGATGGCAACGTTGGCCAAATGCTATAT                         AGGATAGAAGACAAGGGCAAGGAATATGGGTCATATGTTAAATCTGGCAAG
genomic: AACTGCCTGAAAACCCTGCTGAGGATGGCAACGTTGGCCAAATGCTATATgtactaatct ... gtgttgctagAGGATAGAAGACAAGGGCAAGGAATATGGGTCATATGTTAAATCTGGCAAG
EST: gi|209703108|gb|BW673293.1|BW673293
EST:     AACTGCCTGAAAACCCTGCTGAGGATGGCAACGTCGGCCAAATGCTGTAT                         AGGATAGAAGACAAGGGCAAGGAATATGGGTCATATGTTAAATCTGGCAAG
genomic: AACTGCCTGAAAACCCTGCTGAGGATGGCAACGTTGGCCAAATGCTATATgtactaatct ... gtgttgctagAGGATAGAAGACAAGGGCAAGGAATATGGGTCATATGTTAAATCTGGCAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAACCCTTTTGGGTTTGTCACTGACAACCCTTCTAGCCGAAATGCCATTCAACTGCCTGAAAACCCTGCTGAGGATGGCAACGTTGGCCAAATGCTATATgtactaatctttctttcctttcctccttctagcttccagttccttttaattaagttttgatattgaagactttatgttatttatgcatgacaagacatttgtttctccaactatttatgttgtagtgatgatagttctcctttagtgggaaagtagtaatagtttttgtgttgctag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG