1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCTGCGTGTGCTGCTGAAGCCGCTGGAGACCAAGCCCGGTGTGAAGTTCACCTTCATCGCCGACTGCTGTCACTCTGGGACCCTTTTGGACCACGAATCGgtgagttatctttctttgtagcatttgcactcattaaggtattcttaatatgcgttctggagttttaaaatgggtttcagatgggggggggacgggtgtg...
species | Chlamydomonas reinhardtii |
transcript | EDP04316 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCTTCATCGCCGACTGCTGTCACTCTGGGACCCTTTTGGACCACGAATCG GTGCAAATCAGCGGCCCCAAGTCGGGCGCGCCCCCGCCGCCGGCCATCGNAEST: gi|15697523|gb|BI721828.1|BI721828
genomic: CCTTCATCGCCGACTGCTGTCACTCTGGGACCCTTTTGGACCACGAATCGgtgagttatc ... tcgcgcgcagGTGCAAATCAGCGGCCCCAAGTCGGGCGCGCCCCCGCCGCCGGCCATCG-A
EST: CCTTCATCGCCGACTGCTGTCACTCTGGGACCCTNTTGGACCACGAATCG GTGCAAATCAGEST: gi|14242129|gb|BG860945.1|BG860945
genomic: CCTTCATCGCCGACTGCTGTCACTCTGGGACCCTTTTGGACCACGAATCGgtgagttatc ... tcgcgcgcagGTGCAAATCAG
EST: CCTTCATCGCCGACTGCTGTCACTCTGGGACCCTTTTGGACCACGAATCG GTGCAAATCAGCGGCCCCAAGTCGGGCGCGCCCCCGCCGCCGGCCATCGACEST: gi|15702006|gb|BI726311.1|BI726311
genomic: CCTTCATCGCCGACTGCTGTCACTCTGGGACCCTTTTGGACCACGAATCGgtgagttatc ... tcgcgcgcagGTGCAAATCAGCGGCCCCAAGTCGGGCGCGCCCCCGCCGCCGGCCATCGAC
EST: CCTTCATCGCCGACTGCTGTCACTCTGGGACCCTTTTGGACCACGAATCG GTGCAAATCAGCGGCCCCAAGTCGGGCGCGCCCCCGCCGCCGGCCATCGACEST: gi|10127893|gb|BE726709.1|BE726709
genomic: CCTTCATCGCCGACTGCTGTCACTCTGGGACCCTTTTGGACCACGAATCGgtgagttatc ... tcgcgcgcagGTGCAAATCAGCGGCCCCAAGTCGGGCGCGCCCCCGCCGCCGGCCATCGAC
EST: CCTTCATCGCCGACTGCTGTCACTCTGGGACCCTTTTGGACCACGAATCG GTGCAAATCAGCGGCCCCAAGTCGGGCGCGCCCCCGCCGCCGGCCATCGACEST: gi|16433037|gb|BI998263.1|BI998263
genomic: CCTTCATCGCCGACTGCTGTCACTCTGGGACCCTTTTGGACCACGAATCGgtgagttatc ... tcgcgcgcagGTGCAAATCAGCGGCCCCAAGTCGGGCGCGCCCCCGCCGCCGGCCATCGAC
EST: CCTTCATCGCCGACTGCTGTCACTCTGGGACCCTTTTGGACCACGAATCG GTGCAAATCAGCGGCCCCAAGTCGGGCGCGCCCCCGCCGCCGGCCATCGAC
genomic: CCTTCATCGCCGACTGCTGTCACTCTGGGACCCTTTTGGACCACGAATCGgtgagttatc ... tcgcgcgcagGTGCAAATCAGCGGCCCCAAGTCGGGCGCGCCCCCGCCGCCGGCCATCGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGCGTGTGCTGCTGAAGCCGCTGGAGACCAAGCCCGGTGTGAAGTTCACCTTCATCGCCGACTGCTGTCACTCTGGGACCCTTTTGGACCACGAATCGgtgagttatctttctttgtagcatttgcactcattaaggtattcttaatatgcgttctggagttttaaaatgggtttcagatgggggggggacgggtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggagttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgggtgt