1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
CACCGGCAACCTGGCGGAGGCAGTGGCGGACGCCGACCTGCTGGTGTTCTGCGCGCCGCACCAGTACATCCGCGGCATTTGCAAGCAGCTCATGGGCAAGgtgcgcccccgtgccattgtgcttgattgcttgtgctgtgcatgtatgattgatttggccgaggcgcaaaaccatactcgacaaaccgcctgaaccgaatttgcaccagtctcgtcaacagccaactaaccatactcgtccgcctacctgtccccctactcacccccag
species | Chlamydomonas reinhardtii |
transcript | EDP09534 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GCGCGCCGCACCAGTACATCCGCGGCATTTGCAAGCAGCTCATGGGCAAG GTCAAGCCGGGCGCCGCCGCCATCAGCCTGACCAAGGGCATTGCGCGTCACEST: gi|22056096|gb|BQ812188.1|BQ812188
genomic: GCGCGCCGCACCAGTACATCCGCGGCATTTGCAAGCAGCTCATGGGCAAGgtgcgccccc ... tcacccccagGTCAAGCCGGGCGCCGCCGCCATCAGCCTGACCAAGGGCAT-GCGCGTCAC
EST: GCGCGCCGCACCAGTACATCCGCGGCATTTGCAAGCAGCTCATGGGCAAG GTCAAGCCGGGCGCCGCCGCCATCAGCCTGACCAAGGGCATGCGCGTCACG
genomic: GCGCGCCGCACCAGTACATCCGCGGCATTTGCAAGCAGCTCATGGGCAAGgtgcgccccc ... tcacccccagGTCAAGCCGGGCGCCGCCGCCATCAGCCTGACCAAGGGCATGCGCGTCACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACCGGCAACCTGGCGGAGGCAGTGGCGGACGCCGACCTGCTGGTGTTCTGCGCGCCGCACCAGTACATCCGCGGCATTTGCAAGCAGCTCATGGGCAAGgtgcgcccccgtgccattgtgcttgattgcttgtgctgtgcatgtatgattgatttggccgaggcgcaaaaccatactcgacaaaccgcctgaaccgaatttgcaccagtctcgtcaacagccaactaaccatactcgtccgcctacctgtccccctactcacccccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA